Streptomyces goshikiensis: PET44_27945
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Entry
PET44_27945 CDS
T09307
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PET44_27945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgk03400
]
PET44_27945
Enzymes [BR:
sgk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PET44_27945
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PET44_27945
DNA repair and recombination proteins [BR:
sgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PET44_27945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
WBY23138
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All DBs
Position
6336205..6337065
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AA seq
286 aa
AA seq
DB search
MPELPEVEALREFLDEHLTGRVVERVHPLAVSVLKTYEPPLTALEGQPAGTTARHGKFLA
LRIGELHLVTHLARAGWLRWQDSFPEQPPRPGKGPLALRLVLEGGGGFDLTEAGTQKRLA
VYVVRDPQEVPGIARLGPDPLADAFDRDAFAALLAGERRQIKGVLRDQGVIAGIGNAYSD
EILHRAKVSPFKLAASFDEEQVTHLYGAVQDTLREAVARSHGVAAGRLKAEKKSAMRVHG
REGEPCPVCGDTVRSVSFADSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttgccggaggtcgaggcgctgagggagttcctcgacgaacacctcaccggg
cgggtggtcgaacgcgtccacccgctcgccgtcagcgtgctcaagacgtacgagcccccg
ctcaccgccctcgaagggcagcccgccgggaccaccgcccgccacggcaagttcctcgcc
ctgcgcatcggcgagctccacctcgtcacccacctcgcccgcgccggctggctgcgctgg
caggactccttccccgagcagcccccgcgccccggcaagggcccgctcgcgctgcgcctc
gtactggagggcggcggcggcttcgacctcaccgaggcgggaacgcaaaaacgcctcgcc
gtgtacgtcgtgcgcgacccgcaggaggtgcccgggatcgcccgcctcggccccgacccg
ctcgccgacgccttcgaccgggacgccttcgccgccctcctcgccggcgagcggcgccag
atcaagggcgtgctccgcgaccagggcgtcatcgcggggatcggcaacgcgtacagcgac
gagatcctgcaccgcgccaaggtctccccgttcaagctcgccgcctccttcgacgaggag
caggtgacgcatctgtacggcgccgtccaggacaccctccgcgaggccgtcgcccgctcg
cacggggtcgccgccggacggctcaaggccgagaagaagagcgccatgcgcgtgcacggc
cgcgaaggggagccctgtccggtgtgcggggacaccgtccgctcggtgtccttcgccgat
tcctccctccagtactgccccacctgtcagaccggcgggaagccgctggccgaccggagg
ctctcgcggctcctcaagtga
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