Shewanella glacialimarina: FJ709_00020
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Entry
FJ709_00020 CDS
T07885
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgla03032
]
FJ709_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_00020 (gyrB)
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
FJ709_00020 (gyrB)
DNA replication proteins [BR:
sgla03032
]
Prokaryotic type
DNA Topoisomerases
FJ709_00020 (gyrB)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FJ709_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
UCX03054
LinkDB
All DBs
Position
3803..6220
Genome browser
AA seq
805 aa
AA seq
DB search
MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI
TIMIHTDGSVSVKDDGRGIPVAIHEEEGVSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG
VSVVNALSKKLQLTIRRAGKIYEQFYTHGVPDEPIKEIGDAVKTGTEIRFWPSSDTFTNV
EFHFDILAKRVRELSFLNSGVGIRLVDERENRDEFFKYEGGISAFVDYLNRNKTPINKEV
FHFVQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNTYMER
EGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLND
YLLENPVNAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSE
IYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKK
GKQEQYLKDELALTEYLTTQALDGTHIYPSQGALGMSGEPLERLVTQYREVEKIIKRLEK
RFPTNITNRMLYHPEITTAMLADQGVMNVWCDAFIADLVALENSGVIYSSEVILDPERKV
YTPKVIIRKHGIDTSYVFGYDFFTSTDYQRIAKLGAALDGMIEEGGYVQRGERLKEVDSF
LEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLRVMIEDAVAADQLFSC
LMGDHVEPRREFIETNALNVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaatagttacgattcttcgagtattaaggttttaaaaggccttgatgcagta
cgtaagcgccctggtatgtatattggtgatactgatgatggtacgggccttcaccatatg
gtattcgaagtcgtcgataactctatcgatgaagcgttagccggtcactgtagtgacatt
actatcatgattcatactgatggttcagtgtctgtcaaagatgatggccgtggtattccg
gttgctatccatgaagaagaaggggtttctgccgctgaagtgatcatgaccatactgcat
gctggcggtaagtttgatgataactcatataaagtctctggcggccttcacggtgtaggc
gtatcggtagttaatgcattatcgaaaaagctgcagttaactattcgtcgagcgggtaag
atttatgagcagttttatactcatggtgtacctgatgagccaattaaagaaataggcgat
gcggttaaaaccggtactgaaattcgtttttggccaagctctgatacttttaccaatgta
gagtttcattttgatattttagctaaacgtgttcgtgaactgtctttccttaactcaggc
gtgggtattcgtcttgtagatgagcgtgaaaatagagatgaattctttaaatatgaaggc
ggcattagcgcgttcgtcgattacttaaaccgtaataagacacccatcaacaaagaagta
ttccattttgttcaagagcgtgaagacggcattaccgttgaagtggctatgcaatggaat
gatggttatcaagaaaatattttctgttttaccaataacatccctcaacgtgatggtggt
actcatttagccggtttccgaggtgcgttaacccgtaacttgaatacttatatggagcgt
gaaggcttcaataaaaaaggcaaaaccagtgcaacaggtgatgatgcccgtgaaggctta
accgcggttatttcagttaaagtgcctgatccaaagttcagctcacagaccaaagataaa
ttagtgtcaagtgaagtgaaaagtgcggtagaacaaaccatgggtgagaagttgaatgac
tacctattggaaaatcctgttaacgctaagttgatcgtcggtaaaattgttgatgcagct
cgtgcgcgtgaagcagcgcgtaaagcccgtgaaatgactcgtcgtaaaggcgcattagat
ttaggtggtttgcctggtaaattggccgattgccaagagaaagaccctggtctttctgaa
atatacatagtggaaggagactctgctggcggtagtgctaagcaggggcgtaatcgtaaa
aaccaggccattctaccgttgaaaggtaaaattttaaacgtagaaaaagcccgttttgac
aaaatgttatcttcacaagaagtagccacgcttatcactgcactaggttgtggtattggc
cgtgatgaatataatccagataaaactcgttaccacaatatcgttatcatgaccgatgct
gacgtcgacggctctcacattcgtaccttgttgttgaccttctttttccgtcaaatgcct
gagcttattgaacgtggctatgtgtatattgcacaaccacctctgtataaagttaaaaaa
ggcaaacaagaacaatacttaaaagatgaattagccctaactgaatatctaacaacccaa
gctttagatggcactcacatctatccaagccaaggcgcattaggtatgagcggtgaacca
ttagagcgtttagtgactcagtatcgtgaagttgagaagattatcaaacgcttagaaaag
cgttttccaactaacattactaatcgtatgctttatcatcctgaaataaccacagcaatg
cttgctgatcaaggtgtgatgaatgtatggtgtgatgcctttattgctgatttagttgct
ttagaaaatagcggggtgatttattcatctgaagttattttagatcctgagcgtaaagtt
tataccccaaaagtgattattcgtaagcacggtattgatactagctacgtatttggctat
gacttcttcacttctactgactatcagcgcattgctaagttaggcgctgctttagacggt
atgattgaagaaggcggctatgtgcaacgtggtgagcgtctaaaagaagtggatagcttc
ttagaagcgttagattggaccattagcgaagcaaagcgtggcttatatattcaacgttat
aaaggattgggtgaaatgaaccctgagcaattgtgggaaactacaatggatccagagtct
cgtcgtatgttgcgagtcatgattgaagatgcggtcgctgccgatcaactgttcagttgt
ttgatgggtgaccatgttgagcctcgtcgtgagtttattgaaactaacgcgttaaatgtg
gctaacttagacgtctag
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