Shewanella glacialimarina: FJ709_01985
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Entry
FJ709_01985 CDS
T07885
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ709_01985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgla03019
]
FJ709_01985
03009 Ribosome biogenesis [BR:
sgla03009
]
FJ709_01985
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJ709_01985
Messenger RNA biogenesis [BR:
sgla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJ709_01985
Ribosome biogenesis [BR:
sgla03009
]
Prokaryotic type
rRNA helicases
FJ709_01985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
HEM4
AAA_19
PFU
Motif
Other DBs
NCBI-ProteinID:
UCX03394
LinkDB
All DBs
Position
complement(480518..482389)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSNERTFRELGLSENLLRALDELGYENPTPIQAASIDPLMAGQDIIGQAQTGTGKTGAF
ALPLLNKVDINLNAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLS
ALKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPAN
SQLALFSATMPEQIKRVASKHLTNPVNISIASSQATVESIEQSYVQVSQHNKLEALVRVL
EVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI
ERATNSRIAPMKIPTPESVAERRLSRLGEQIQETLNGDLDFMKNAVAELCTQLEIDTDLL
AAALLQQVQQERPLQLPPIQERQRDSRDERSERSDRGSRDGGDRPRRDRSERSSRPSSPT
TFGQPEGLKDNPDVKMNRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGQIQLYDQVTT
VDLPDGMPKDVLTHLRKVRVCGRPLNIREAGDEVFVDSGRGAAAPRRPRGDRPSGDRRPR
TDRPAGDRPASAERRPRKPRDNG
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaaagaactttccgcgaactcggcctgtctgagaacttgttgcgtgct
ctagacgaattaggctatgagaacccaacacccattcaagcagctagtatcgacccgctt
atggcaggacaagatattatcggtcaagcgcaaacaggtactggtaaaacaggtgctttt
gcattaccactgcttaacaaagtagatatcaatctaaacgcccctcaaatattagtatta
gcacccactcgtgagctagccgttcaggtagcagaagcatttggtagttacgctaaacat
atgaaaggcttccacgtactgcctatttacggcggtcaaagcatgcatcagcaattaagc
gcccttaagcgtggaccacaagtgattgttggtacacctggtcgagtaatggatcacatg
cgtcgtggcacattaaagttagattcattaaaagcattagtgcttgatgaagctgatgaa
atgttaaaaatgggctttattgatgatatcgaatgggtattagagcacaagccagctaac
agccaacttgcattattctcagccactatgcctgagcaaattaagcgtgttgccagcaag
cacttaaccaacccagttaatatcagtatcgcttctagccaagcaacggttgaatcaatt
gagcaaagctatgttcaagtatcacaacacaataaactagaagcattagtacgcgtatta
gaagttgaaaacactgaaggtgtgatcattttcgtccgtacccgtaatagctgtgttgag
ttagcagaaaaattagaagcacgtggttatgcttcatcaccattacatggtgatatgaac
cagcaagcacgtgaacgtgctgttgaacagttaaaaaatggcaaattagatattctaatt
gcgactgacgttgcggctcgtggtcttgacgtagaacgtattggacacgtagtcaactac
gatatcccatatgatacagaagcttatgttcaccgtattggccgtactggccgtgctggt
cgtacaggtatggcaattctgtttgtgacaagccgtgaaatgcgtatgcttcgcactatt
gaacgtgcaacaaacagccgtattgcaccaatgaaaatccctacacctgaatcggttgct
gagcgccgtttatctcgtttaggtgagcaaattcaagaaaccttaaacggtgacttagat
ttcatgaaaaatgccgttgcagaattatgtactcagctagaaatcgataccgatttatta
gccgcagcgttattacagcaagtgcagcaagagcgtccacttcagttaccgccgatccaa
gagcgtcaacgtgattcacgtgatgagcgaagtgaacgtagtgaccgtggttctcgcgat
ggtggcgatcgtccacgtcgtgatcgcagtgagcgcagtagtcgtccgtcatcaccaacc
acatttggtcaacctgaaggattaaaagataatcctgacgtgaaaatgaaccgctatgta
attgatgtgggtcgtgaaaatggtgttggtgtgggtaacattgttggcgcaattgctaac
gaagcgaacatcgatagccgttatattggtcaaatccagttatatgatcaagtcactact
gttgatttgcctgatggcatgccaaaagacgtgttaactcacttaagaaaagtgcgtgtt
tgtggtcgtccacttaacattcgcgaagccggtgatgaagttttcgttgattctggccgt
ggtgcagctgcacctcgtcgtccacgtggtgaccgcccatcaggcgaccgtcgtccacgt
actgaccgcccagctggtgatcgtcctgctagtgcagaacgtcgtccacgtaaaccacgt
gacaatggttaa
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