Shewanella glacialimarina: FJ709_01995
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Entry
FJ709_01995 CDS
T07885
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FJ709_01995 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_01995 (uvrA)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJ709_01995 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FJ709_01995 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_23
AAA_25
DnaJ_CXXCXGXG
AAA_21
NACHT
nSTAND3
Viral_helicase1
T2SSE
Motif
Other DBs
NCBI-ProteinID:
UCX03395
LinkDB
All DBs
Position
complement(483686..486571)
Genome browser
AA seq
961 aa
AA seq
DB search
MDNIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVTEIYDYLRLLFARVGEPRC
PTHAQPLAAQTVSQMVDKVLALPEDSRQMLLAPVINDRKGEHVKLLESLAAQGYIRARID
GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRPDLKQRLAESFETTLELSGGIAKIVSMEDN
NTEELIFSANFACTLCGYSMTELEPRIFSFNNPAGACQTCDGLGVQQFFDPERVITNSEL
SLAGGAIRGWDRRNFYYFQMLSSLAEHYKFDVEVPFEQLNDKIKKLVLYGSGKQSIAFKY
INDRGDVVVRNHPFEGILNNMDRRYRETESNSVREELSKFINMQPCNSCGGSRLREEARN
VFIGDLNLPQLTTWSIGEAKSYFAELTFDGQRAQIADKILKEIGERLGFLVNVGLNYLSL
SRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLHTLMHLRDLGNT
VIVVEHDEDAIRMADHVIDIGPGAGVHGGEIIAEGTLNDILNCAESVTGQYLSGKKQIHI
SDQRTPIDPKKVIELFGATGNNLQNVDLTIPVGLLTCVTGVSGSGKSTLINDTFFKIAHR
MLNGATVDEPAPYKEIKGMEHCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAATQE
SRTRGYLVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKAKRYNRETLEVKY
KGKNIHEVLQMTIEEARVFFDAIPAIARKLQTLMDVGLSYICLGQSATTLSGGEAQRVKL
AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIQTADW
IIDLGPEGGSGGGNILVAGSPEDVAEHPTSHTARFLKPMLALHKQRAASNKVSKAKKSTK
K
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggacaatattgaaatccgcggtgcccgaacccacaaccttaaaaacatcaatttaacc
atcccgagagataagctaattgttatcacaggattatctggttcaggaaaatcttcatta
gccttcgatactttgtatgcagaaggtcagcgccgctatgtcgagtctttatcctcctat
gcgcgccaatttttaagtttaatggaaaaacctgatgttgatcatatcgaaggattaagc
ccagcaatttctatcgaacaaaaatcgacctcacataacccacgctcaacggttggcaca
gtgaccgagatttacgattacttgcgactattatttgcccgtgttggtgagccgcgctgc
cccacacatgcacaacctttagcggctcaaactgtcagccaaatggtcgataaggtactc
gcattacctgaagatagccgtcaaatgcttttagctcctgtgattaatgatcgcaaaggt
gagcacgtaaaattattagaaagcttagctgcccaaggttatatccgcgcccgaattgac
ggtgaagtttgcgatttaaccgacccaccaacgcttgatttacacgtaaaacataccatt
gaagtggtggttgaccgtttcaaagtgcgtccagacttaaaacaacgtttagctgaatca
tttgaaaccacattagagctgtccggtggtattgctaaaattgtctcaatggaagataac
aatactgaagaactgattttttcagccaactttgcctgtaccctttgtggctattcaatg
accgaacttgagccgcgtattttttcattcaataacccggctggtgcttgtcaaacctgt
gatggtttaggggtacaacaattttttgacccagaaagagtgatcaccaatagtgagtta
tctttagctggcggggcaattcgcggttgggatcgccgtaatttttattactttcaaatg
ctcagttcattagctgaacactacaaatttgatgttgaagtcccttttgaacagctcaat
gacaagatcaaaaagctggtgctatacggttcaggtaaacaaagcattgcctttaaatac
ataaacgatcgtggcgatgtagtggtacgtaatcacccctttgaaggcattctcaataat
atggatcgccgctaccgcgaaactgaaagtaactcggtacgtgaagaattatctaaattc
atcaatatgcagccttgtaatagctgtggtggctcacgcttacgtgaagaagcccgcaat
gtgtttattggcgatctcaacttgccacaattgaccacctggtcaattggcgaagcaaaa
agctattttgctgaattaacctttgatggccagcgggcacaaattgctgacaaaatttta
aaagaaattggtgagcgtttaggtttcttggtaaatgtcggacttaattacctaagctta
tcccgttcggctgacaccttatcaggcggtgaagcgcagcgtattcgtcttgccagtcaa
attggtgcgggcttagtcggggtaatgtatgtgctcgatgaaccttcaatcggcctgcat
caacgtgacaatgaacgtctattgcataccttaatgcacctgcgtgatctaggtaatacc
gtcattgtggtagagcacgatgaagatgccattcgtatggctgaccatgtgattgatatt
ggccctggcgcaggggttcatggcggggagattattgcagagggcaccttaaacgatatt
cttaattgtgctgaatctgttacgggtcaatacctgtcaggcaaaaaacaaattcacatt
agtgaccaacgtaccccaatcgatcctaaaaaagttatcgagttattcggcgcaacaggt
aataacctgcaaaatgtcgacttaactattccagtaggcctattaacctgcgtaaccggt
gtgtcgggttcgggtaaatcgaccctgattaatgatactttcttcaaaattgcccatcgc
atgctcaatggcgcaactgttgatgaacccgcgccttataaagaaattaaaggcatggag
cattgcgataaagtcgtcgatattgatcaaagcccaattggccgaactccccgatcaaac
cctgctacctatacgggtatttttaccccaatacgggagatatttgctgcgactcaagag
tcccgcacccgaggttatctggtgggtcgtttctcgtttaacgtcaaaggcggtcgctgt
gaagcgtgccagggtgatggcttaattaaagtcgaaatgcactttttacccgatgtatat
gtgccctgtgatgcctgtaaagccaagcgttataaccgtgaaaccttagaagtaaaatac
aaaggcaaaaacattcacgaagtcctgcaaatgacgattgaagaagcccgggtgtttttt
gatgctattcctgcaattgcccgtaaattacaaacactgatggatgtcggtttgtcgtat
atttgcttaggacaaagtgcgacgactctatctggcggtgaagcgcagcgtgtcaaactg
gctaaagagctgtcaaaacgcgacacaggcaaaaccttatacattttggacgaacccact
acagggcttcattttgctgatattcaactactattagatgtattgcatcgccttaaatcc
cacggcaatactatcgtggtgattgaacataacttagatgtgattcaaacagcggattgg
attatcgatttaggcccagaaggcggatcgggaggcgggaatattttagttgctggcagc
cctgaagatgtggccgagcacccaacatcccacacagcacggtttttaaagccaatgctg
gcattacataagcagcgtgcagcaagtaataaagttagcaaagctaaaaaaagcactaaa
aaataa
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