Shewanella glacialimarina: FJ709_04750
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Entry
FJ709_04750 CDS
T07885
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgla03016
]
FJ709_04750 (truB)
Enzymes [BR:
sgla01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
FJ709_04750 (truB)
Transfer RNA biogenesis [BR:
sgla03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
FJ709_04750 (truB)
Prokaryotic type
FJ709_04750 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Nrd1-Seb1_dom2
Motif
Other DBs
NCBI-ProteinID:
UCX03878
LinkDB
All DBs
Position
1095778..1096740
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AA seq
320 aa
AA seq
DB search
MARRQKGRFIDGIVLLDKGTGISSNHALQRVKRFFNANKAGHTGALDPLATGMLPVCLGE
ATKFSQHLLDADKRYTVIAKLGQRTDTSDSDGEVVQERDINFTEDQLQQALAHFRGDTMQ
VPSMYSALKHQGKPLYKYAREGIEVPREARPITVFELNFLGLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVANYPYDKMVTLEQLAAMIDSATEQEISPFEALDSLL
LPMDTAVANFTEINLPQDMLYYVMQGQAIHASGLKPDELVRITIGEEHKFVGVGSMNDDG
LLAPKRLIVIREAEAANTIS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcgtcaaaaaggtcgttttattgatggcatcgttttactcgataaaggtacg
ggcattagctctaatcatgcccttcaacgagtaaaacgtttttttaatgccaataaagct
ggacataccggtgcgctagatccgctagcaacgggtatgctacctgtttgtttaggcgag
gcaactaagttttctcaacatcttctagatgctgataaacgctatacagtgattgctaag
ctagggcagcgaacagataccagtgactcagatggcgaagtggttcaagagcgagacatt
aattttactgaagatcaactgcaacaagcattagcgcattttcgtggtgatactatgcaa
gtgccttcaatgtattctgcattaaagcatcaaggtaagccgctttataaatatgctcga
gagggtattgaagtcccacgtgaagcaagaccgattacggtttttgaattgaactttttg
ggactagaaggtgacgagctaacacttgatattcactgttccaaaggcacttacattcgc
actattattgatgatcttggtgaaatgctaggctgtggtgcgcatgttattatgttgcgt
cgcacacaagttgccaattatccttacgataagatggtaaccttagaacagttagcggcg
atgattgattctgcgactgagcaagagatttctccttttgaagcgttagattcactatta
ctgccgatggatacagcggtagctaatttcactgaaataaatttaccgcaagatatgttg
tattatgttatgcagggccaagcaatacacgcatccggattaaaacccgacgaattagtg
cgcatcaccattggtgaagagcataaatttgtcggcgtggggtcgatgaatgatgatggt
ttactcgcacctaagcgtctaattgttattcgcgaagctgaagcagctaatactataagt
tga
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