Shewanella glacialimarina: FJ709_05450
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Entry
FJ709_05450 CDS
T07885
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla00521
Streptomycin biosynthesis
sgla00523
Polyketide sugar unit biosynthesis
sgla00525
Acarbose and validamycin biosynthesis
sgla00541
Biosynthesis of various nucleotide sugars
sgla01100
Metabolic pathways
sgla01110
Biosynthesis of secondary metabolites
sgla01250
Biosynthesis of nucleotide sugars
Module
sgla_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
FJ709_05450 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
FJ709_05450 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
FJ709_05450 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
FJ709_05450 (rfbB)
00525 Acarbose and validamycin biosynthesis
FJ709_05450 (rfbB)
Enzymes [BR:
sgla01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
FJ709_05450 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Sacchrp_dh_NADP
KR
Motif
Other DBs
NCBI-ProteinID:
UCX06589
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All DBs
Position
1256694..1257776
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AA seq
360 aa
AA seq
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MKILVTGGAGFIGSALVRFIIEHTQDEVVNVDKLTYAGNLASLQSVSNNPRYHFELVDIC
NRAELDRVFAEHQPDFIMHLAAESHVDRSITGPSDFIQTNIVGTFTLLETAREYWQTLVL
AKQNQFRFHHISTDEVFGDLPHPDDVCADQVAYLPKFTEQTSYAPSSPYAASKASSDHLV
RAWCRTYGLPTIVSNCSNNYGPYHFPEKLIPLVILNAIEGKDLPIYGKGDQIRDWLYVED
HARALYKVVTEGKVGETYNIGGHNEQRNIDVVKAICGILDALLPKETSYAEQITYVTDRP
GHDRRYAIDTTKISNELNWQPQETFATGLRKTIEWYLTHQTWCQHVQDGRYQGERLGLNS
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
ttgaagattttagtgacgggtggagcaggttttattggctcggccttagtgcgttttata
attgagcatacccaagatgaagtcgttaatgttgataaactcacctatgcgggtaactta
gcgtctttacaatctgtgagtaataacccgcgttatcattttgagctggtcgacatttgt
aatcgtgctgagttagatcgtgtttttgctgaacatcagcctgattttattatgcattta
gccgctgaaagtcatgttgaccgttcaattactggacccagtgattttattcaaaccaat
attgtcggcacttttacgttgttggagacagcgcgtgaatactggcaaacactcgtcctt
gctaaacagaatcaatttcgttttcaccatatttctaccgatgaagtgtttggtgactta
cctcatcctgatgatgtgtgtgctgatcaagttgcctatttacctaaattcactgaacaa
acatcttatgcacccagtagtccttatgcagcatcaaaagcatccagtgatcatttagtt
cgtgcatggtgccgaacatatggcttgccaacgattgtgagtaattgttcgaataattat
ggtccttaccactttcctgagaagttaattccactggttattttaaatgcaatagagggc
aaagatttaccgatttatggtaaaggcgatcaaattcgtgattggttatatgtcgaagac
cacgctagggcactgtataaagtggtgactgaaggtaaggtgggtgagacctacaatatt
ggtggccataatgagcaacgcaatatcgatgtagtgaaggctatttgtggtattttagat
gctcttttgcctaaagagacttcttacgctgaacaaattacttatgtcacagacagaccc
ggtcatgaccgtcgttatgctattgataccaccaaaataagcaatgaattgaactggcaa
ccacaagaaacctttgcaacaggtttacgtaaaaccatcgagtggtatttaactcaccaa
acctggtgtcaacatgtgcaagatggtcgttatcaaggtgagcgtttaggccttaattct
tga
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