Shewanella glacialimarina: FJ709_07055
Help
Entry
FJ709_07055 CDS
T07885
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_07055
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
FJ709_07055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
DUF7577
AAA_30
AAA_16
SLFN-g3_helicase
AAA_22
DZR
AAA
zf-tcix
SNF2-rel_dom
DUF3638
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UCX04275
LinkDB
All DBs
Position
complement(1628057..1629868)
Genome browser
AA seq
603 aa
AA seq
DB search
MKASTDTPTLQLRDYQQDSVNAAIKHFRSSQQSAVLALPTGAGKSIVIAELARIANGNVL
VLTHVKELVAQNAEKVGLLTQAANIYSAGLNQKKANGKTVVASVQSAARALDRFNQPFSL
VIIDECHRVSNEKTSQYQQILQHLKKQNPAIKILGLTATPYRLGIGWIYHHHYHGKIGNT
DTAVFDKCIFELPMRPLIKQGFLTAPKLFDGLSAQYDFSQLEPTESGEFNQQEVESLLNH
QGRATTAIVKQIVQLANVRKGVIIFAATVRHAQEIIGLLNKLIDNAATPTKAALITAATP
HNERDTIIDAFKAQQIKYIVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRLA
PGKTDCLVIDYAANGFDLYYPEVGQAKPNSKSVPVQVHCPVCQFANTFWGLVDNDGDIIE
HFGRRCQGLVAANTAAVKAKTANTEQQCDFRFRSKVCPDCGAENDIAARICQTCNSTLID
PDKRLKQVLQSQHHHLFKCQEMLITQNEQGLLVRYIDIEGNDFKQSFKFDTPAQRKAFYA
VFVLSHTRTPGMLHPRYDKAEQVLSDQSRFRKPDLLLLKKQKHHWKLIDLFFDYQGKHKT
DFS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcttctactgacacacctactttgcaactgcgcgattaccaacaggattcggtt
aacgccgccatcaagcactttcgcagcagccaacaatctgccgtattggctttgccaacg
ggtgcaggtaaaagcattgtaattgctgaactggcacgcattgccaacggcaatgtatta
gtgctcacccatgtaaaagagttagttgcgcaaaatgctgaaaaagtcggcttactcacc
caggctgccaatatttactctgccggattaaaccagaaaaaagctaacggcaaaaccgtc
gtcgccagcgtacagtcagcagcgcgggcattagatagattcaaccagcctttttcgctg
gtgattattgatgaatgccatcgcgtcagtaatgaaaaaaccagccaatatcagcaaatt
ctacagcacctaaaaaagcaaaatccagccattaaaatcttaggactcactgcaactcct
tatcgtctgggcattggctggatatatcatcaccattaccacggtaaaattggcaatact
gacactgcagtgttcgataaatgtatttttgaattacccatgcgcccgcttatcaagcaa
ggctttttaactgcgcctaagttatttgatggcctcagtgcccagtacgattttagtcaa
cttgaaccgacagaaagcggcgagtttaatcagcaggaagtcgaatctttactgaatcat
caaggccgtgccacaacagcgatagtcaaacaaatagtccaactggcaaatgttcgtaaa
ggggtaattatttttgccgcaaccgtacgtcacgcacaggaaattattggcttattaaac
aagcttatcgacaatgccgccacgccaaccaaagcggcattaatcaccgccgccacgccc
cataatgaacgcgacaccattatcgatgcctttaaagcgcagcagattaaatacattgtc
aatgtggccgtactcaccacgggctttgacgcgccccatgtcgacttaattgctatttta
aggcctacggcatcggtaagcttatttcaacaaatggtggggcgtgggctgcgtttagcg
ccgggtaaaaccgattgtttggtgattgactacgccgccaatggttttgacttatattat
cctgaagttggccaggccaaacccaacagcaagtcagtgccggtacaagtgcactgccct
gtgtgccaatttgccaatacattttggggattagtcgataatgacggtgacatcatcgaa
cattttggccgccgatgtcagggacttgttgctgctaataccgcggcggtaaaagctaaa
acagccaataccgaacaacaatgcgactttcgcttccgctctaaagtctgcccagactgc
ggcgcagaaaacgatatcgccgcgcgcatttgccaaacctgtaactcaacactcatcgac
cctgataagcgcttaaaacaagtattacagtcgcaacatcaccacttattcaaatgccag
gaaatgctcatcacccaaaatgaacagggtttgctggtgcgctacatagatattgaaggc
aatgactttaagcaaagctttaagtttgataccccagcacaaagaaaagccttttacgcg
gtatttgtgcttagccacacccgaacgcctggtatgttacatccgcgatatgacaaagca
gaacaggtactgagtgaccagagccgctttagaaaacccgacttattattactaaaaaaa
caaaaacatcactggaaattaattgatctattttttgactatcaaggtaaacataaaaca
gatttcagttag
DBGET
integrated database retrieval system
