Shewanella glacialimarina: FJ709_09060
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Entry
FJ709_09060 CDS
T07885
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgla03016
]
FJ709_09060 (rnd)
Enzymes [BR:
sgla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FJ709_09060 (rnd)
Transfer RNA biogenesis [BR:
sgla03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FJ709_09060 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
UCX04635
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All DBs
Position
2100129..2101247
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AA seq
372 aa
AA seq
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MFAFEYISNDDALASLVKQYEQASLLVLDTEFVRTRTYYAHLGLIQAYDGKTLALIDPVA
IKDLSSFWSLLTNENIIKVLHSCSEDLEVFAHYGDCQPKPLFDSQIAASLAGMGHGLGYA
KLVEQCLGIELDKGESRTDWMKRPLSDAQLQYAANDVSYLYQIYPQILQKLTEQNRLDWL
YEEGERITQGRLSGVDPDEAYLKVKNAFQLTRPQLAILKVMAAWRLEKAVNRNLALGFVV
KDHALIALAKKAPTSLAELNQLNDLTDQEKRFHGKDLLKVIANADMDNPPEEVDVIALKS
GYKSSFKLIKACLTDISEQQSVPLEFIGSKRLIHQFLVWLFEGKQGDKPLILQGWRGALV
GNKLDSIAFDGE
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgcgttcgagtatataagtaatgatgatgcgttagcctcgttagtaaagcaatat
gagcaagctagcttgctagtgttagacacagaatttgttcgcacccgtacttactatgca
catctgggcttgattcaagcttatgatggcaaaacactagcattgattgatcctgtcgct
atcaaagatttatcgtcattttggtcattattaaccaatgaaaatattattaaggtactt
cactcttgtagtgaagatcttgaagtcttcgcccattatggcgactgtcaacctaagcca
ttatttgatagtcaaattgcggctagtttagcgggtatgggtcacggtttaggttatgcg
aaattagttgagcaatgcttaggtattgaactagacaaaggtgagtcacgcaccgattgg
atgaaacggcctttaagtgatgctcagcttcaatacgcagctaatgatgtatcttactta
tatcagatatacccgcaaattctacaaaaactgactgagcaaaatcgtctagattggtta
tatgaagaaggcgaacggataacccaaggtcgcttaagtggtgttgatcctgatgaagct
tatttgaaagttaagaatgctttccaattgactcgcccgcaacttgcaatcttaaaagtc
atggcagcatggcgccttgaaaaagccgtcaatcgaaatttagctcttgggtttgttgtt
aaagatcatgcactcattgcactcgctaaaaaagcgcctacaagtttggcagagttaaat
cagctaaatgacttaactgatcaagaaaagcgttttcatggaaaggacttattaaaagtc
atcgcaaatgcagacatggataacccgccagaggaagtcgatgttattgctttaaagtca
ggctataagtcatcttttaaattgattaaagcgtgtttaactgacattagtgagcaacag
tctgtaccgcttgagtttattggttcgaagcgtttaattcatcaattcttagtttggtta
ttcgaaggtaagcagggcgataagccattaattttacaaggttggcgtggtgcgttagtg
ggcaataagctagatagtattgcctttgatggtgaatag
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