Shewanella glacialimarina: FJ709_09755
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Entry
FJ709_09755 CDS
T07885
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ709_09755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgla03019
]
FJ709_09755
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_09755
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJ709_09755
Messenger RNA biogenesis [BR:
sgla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJ709_09755
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FJ709_09755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
RQC
Motif
Other DBs
NCBI-ProteinID:
UCX04761
LinkDB
All DBs
Position
complement(2243607..2245565)
Genome browser
AA seq
652 aa
AA seq
DB search
MTDRHSAAYLYQQLKQQFGFDTFRDGQLEVIQQVIQGQSTLAIFPTGSGKSLCYQLSAIN
LPHLTLVISPLLALIQDQLIFLKSKVINAASIDSSLNQQDIQSVMHSVKQGECKILMVSV
ERFKNERFRQFLSQVTISQLVVDEAHCISEWGHNFRPDYLKIPQICQMFSIPQVLLLTAT
ATKKVKLDMCDRFGIEALHVIQTGFYRDNLNLQVVPVAKLDKTQQLTCQIQALFGSGIVY
VTLQQTAEQVASSLVSNGINARAYHAGMDTQARQSIQQQFMSNQIQVIVATIAFGMGIDK
SDIRFVIHYDLPKSIENYSQEIGRAGRDGQASSCITLANLDGLNTIENFVYADTPDLQDI
EKLLNIIKTETDEAGKWEMQELALSKACNIKTLPLKTLLVQLELQGVIQPTFAYFADFKY
QLLVDKRVLLARFDPSRATFIQKILDHTQFKTIWGQLDFDGLHQATNEPRARVVAALEYL
AEQELIILETKKMTQVFYVNMTDIVEVSIASQMHTYFKDKETKEILRIAQLVRFFELGKC
LSRNLACYFDDMNAPIECHHCSVCDGKVAKLPVTQTSQKIDKNQLSQFITELKQQVEVKN
ITITHSTLIKFLAGMSVPILARLKVKNLAGYGALSEWRYQEIVNVVNTLEDK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcgccacagtgcagcatatttgtatcaacagttaaaacaacaatttggtttt
gatactttcagagacggtcagttagaggttatacagcaggttatacaaggacagtctacg
ctagcaatatttcctacgggatcaggtaagtcactttgttatcaactcagtgcaattaat
ctcccccatcttactttggtcatatcccctttacttgccttaatacaagaccaattgatt
tttcttaaatcaaaagtcataaacgcagcaagtattgattcaagtcttaatcaacaagat
attcaatctgtcatgcactcggtaaagcagggtgaatgtaaaatattgatggtgtcggtt
gaacggtttaaaaatgaaagattcaggcagttcctctcccaagtgactatttctcaactt
gtggtagatgaagctcactgtatttcagaatgggggcacaattttaggcctgactacctt
aaaataccgcaaatttgccaaatgttttctattccacaagtgctgctattaaccgcgaca
gcaaccaagaaagttaaactggacatgtgtgaccgatttggcattgaagctttgcatgtc
attcaaactggattttatcgagacaaccttaacttacaggtcgtgcctgttgctaagctg
gataagacacaacaattaacctgccaaatccaagccttatttggcagtggtattgtatat
gtgacattgcaacaaaccgcagaacaagtggccagctcgctagtaagcaatggtatcaat
gcgcgggcttatcatgctggtatggatacccaagctaggcagtcaatccagcaacagttt
atgagcaaccaaattcaagtcattgtagccactattgcatttggtatgggcatagataag
tcagatattcgttttgtcattcattacgatttacctaaatcaatcgaaaattacagtcaa
gaaataggtcgtgcaggtagagatgggcaagcatcaagctgtatcacgttagccaattta
gatggtttaaataccattgaaaatttcgtttacgccgatacgcctgatttgcaagatatc
gaaaaattactcaacattattaaaacagaaaccgatgaagccggcaaatgggaaatgcaa
gagctggcattatccaaagcctgtaatattaaaacattgcctttgaaaactctattggtt
caacttgaactgcaaggcgttatccaacctacgtttgcttattttgcagatttcaaatac
caacttttagttgataagcgggttttgctggctcgttttgacccatctagagccactttt
atacaaaaaatactagaccatactcagttcaaaacaatctggggccaacttgattttgat
ggattacatcaagccacaaatgagcccagagcaagagttgtggccgcgcttgagtactta
gccgagcaagaattaattattttagaaacaaagaaaatgactcaagtattttatgttaat
atgacagatattgttgaggtttctattgcttcgcaaatgcatacatattttaaagataaa
gagactaaagagatactgcgtattgcccagttagtccgtttcttcgagctaggtaagtgt
ttgtcgcgaaacttagcgtgttactttgatgacatgaacgcgccaattgaatgccatcat
tgcagtgtgtgtgacggtaaagtggcaaagttgcctgttacccaaacaagccaaaaaatt
gataaaaatcaactttctcagtttataactgaattaaaacaacaggttgaagttaaaaat
atcactatcactcattctacgttaataaagtttcttgcgggtatgagtgtgcccattctt
gccagattaaaagttaaaaatcttgctggatatggtgcattaagcgaatggcgctatcaa
gagatcgtaaatgttgtaaacactttggaggataaatga
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