Shewanella glacialimarina: FJ709_10040
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Entry
FJ709_10040 CDS
T07885
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FJ709_10040 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_10040 (ruvB)
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJ709_10040 (ruvB)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FJ709_10040 (ruvB)
RecFOR pathway proteins
FJ709_10040 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
AAA_16
AAA_14
AAA_22
nSTAND3
Mg_chelatase
NB-ARC
AAA_3
NTPase_1
RNA_helicase
Rad17
AAA_17
AAA_18
DUF815
AAA_24
AAA_19
TsaE
AAA_33
ABC_tran
AAA_11
Sigma54_activ_2
IstB_IS21
AAA_28
Motif
Other DBs
NCBI-ProteinID:
UCX04808
LinkDB
All DBs
Position
complement(2309093..2310097)
Genome browser
AA seq
334 aa
AA seq
DB search
MIEADRLIQPEIQIHDEVVDRAMRPKMLDEYTGQDDTRAQLKIFIQAALNRKEALDHMLI
FGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEEGDVLFIDEIHRLSP
VVEEILYPALEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR
LEFYNVADLTTIVTRSANVMSLSIAPEGAVEIARRSRGTPRIANRLLRRVRDYAEVKHDG
VVTKEVAEQALDLLDVDLEGFDYLDRKLLLAIIDKFMGGPVGLDNLAAAIGEDRDTIEDV
LEPFLIQQGFIQRTPRGRIATQRAYQHFNIIKPE
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagcagatcgattaatacagcctgaaattcaaattcacgatgaagttgtcgac
agggctatgcgtcctaaaatgctcgatgagtataccgggcaagatgatactcgagcacaa
ctaaagatttttattcaagcggcacttaatcgaaaagaagcgcttgatcatatgttaatt
ttcgggcctccaggattaggtaaaactactttagcaatgattgttgccaatgaaatgggc
gttaatattaagtctacttcagggccagttttagagaaagcgggtgacttagctgcattg
ttgactaatttagaagagggcgatgtgctgtttattgacgaaatacatcgtcttagcccg
gtagttgaagaaattttatatccagctttagaagattatcaattagacattatgattggc
gaaggacctgctgcgcgttcgattaaattggatttgccgccctttacattggtgggtgca
accaccagagcaggtgcactcacatcgccactgcgagcccgttttggtattccgttgcgt
cttgagttttataatgtggctgatttaaccactattgttactcgctcagctaacgtgatg
agtttatcgattgcaccagaaggtgcggttgaaattgctcggcgctcccgcggaacacct
cgaatagcaaaccgccttttgcgccgagtcagagattacgctgaagtgaagcatgatggt
gtagtcactaaggaagtggcagaacaagctcttgacttgcttgatgttgatcttgaaggt
tttgattatttagatagaaagctgctgttggcaattatagataaatttatggggggacct
gtaggccttgataaccttgctgccgcaattggtgaagatagagataccattgaagatgtt
ttagagccatttctaattcaacaagggtttatccagcgaactccccggggtcgtattgca
actcaaagggcttatcagcactttaatataatcaaaccagaatag
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