Shewanella glacialimarina: FJ709_11395
Help
Entry
FJ709_11395 CDS
T07885
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ709_11395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgla03019
]
FJ709_11395
03009 Ribosome biogenesis [BR:
sgla03009
]
FJ709_11395
Enzymes [BR:
sgla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FJ709_11395
Messenger RNA biogenesis [BR:
sgla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FJ709_11395
Ribosome biogenesis [BR:
sgla03009
]
Prokaryotic type
rRNA processing factors
FJ709_11395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UCX05051
LinkDB
All DBs
Position
2621519..2624830
Genome browser
AA seq
1103 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVQEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMSELEVPHGMGLIVRTAGVGKESTEL
KWDLKVLQHHWDAIQEASKTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEA
KLHIGLVRPDFLERVKMYDSEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRSTESLAL
SILRLMEEEAIKEHTTQIEAIVPVDVAAFLLNEKRKAIRITEERHGVEVYVIPDAHMQTP
EYRVIRRKNDDEITESSFKRVEAPKSELYEPRKLERTLAPEPALKGFAAPQKTVEEPKAA
PVKPVVAATPGLFSRITSAISAFFSSDETETKEKPVVKPAVTQDKTNPRRSRRNDSGDNR
NESRNDSRNDTRRKRNDKDSTTTDSKNTRGRNKPTRDKDDTKTVSKPEPVAKPVVSDDKP
TKTVAAEKTPKQEAARERRQRRNMRRKVRIENEQTNDETVLATNLGTTPNETMPADSTKD
VRSDVNNVETAELVATVNTEDKANSEVNHSDKDSKPVRKRQPRKEKPADNQSATVEQATT
SATEETAEFKVDTSVAATAETSVPAITATAAVAVTMPADETVNVTETDESDDDKREGQRR
SRRSPRHLRAAGQRRRRDDDEGASSDTAPVFTPVDELDRQLTEELAQTQAATAADVNQPT
KAEPVLESKAANTSVAEVKVEASAESTRVEAVQTAPIVESKVEVETKAETENKVVEVTTE
KTVSVTSETLPVVEAAVKAEVTKEAEVITPVKDVQSTSTEAKPTKAAVNAPMAKPATIVR
KVVEKAVEPKSEQTKAEVVVPSKPASNSRFGSMVSSTTTKPTVEVREQQAIPQGKSYAET
DKPAAAKSNFANSATAEMTKPQS
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaattaatgcaactcaatctgaagagttgcgtgtcgccctagtagat
gggcaacaattgtatgatctggacattgaaagcccaggccatgaacaaaaaaaatcaaat
atttacaaaggtaaaatcacccgcgtagaaccctctttagaagcagcatttgttgactat
ggcgctgatcgtcatggttttcttccgttaaaagaaattgcccgcgaatacttccctaaa
ggttactcttttcaaggtcgtcctaacatcaaagaagtggtgcaggaaggtcaagaagtt
atcgttcaaatcgataaagaagagcgtggcaataaaggtgcagccttaacaacctttatc
agtcttgcgggttcttatttagtattaatgccaaacaacccgcgcgcgggtggcatctct
cgtcgcattgaaggtgatgagcgtactgaattaaaagaagcgatgtctgaacttgaagtg
ccacatggcatgggcttaattgttcgtactgctggtgtaggtaaagagtcaacagaattg
aagtgggacttaaaagtcttacaacatcactgggatgccattcaagaagcgtctaaaact
aaaggtgctcctttcttaattcatcaagaaagtaatgttattgttcgcgcaattcgtgac
tatttacgtcgtgatgtcggtgaaattctcatcgatcacccacgtatttatgaagaagct
aaattacatattggcttagttcgtcctgattttcttgaacgcgtcaaaatgtacgattct
gaagtgccattatttacccatttccaaatcgaatctcaaatagaatctgctttccagcgt
gaagttcgtttaccctctggtggttcaattgttattgacccaacagaagcattaacctct
atcgatattaactctgcccgtgccactaaaggcggtgatatcgaagaaacggcattaaat
actaaccttgaagccgcagatgaaattgcccgtcaattacgtttacgtgatttaggtgga
ttagtggttatcgactttattgacatgacacctgttcgtcatcaacgtgaagttgaaaat
cgcatgcgtgatgcagtgcatcatgaccgtgctcgtgtgcaattaggtcgtatttcacgt
tttggtctgatggaaatgtcgcgtcagcgcttacgtccttctttagaagagtctgctgca
catttatgtcctcgctgtcatggccaaggtactatccgtagtacagaatctttagcatta
tcgattttacgcttaatggaagaagaagccattaaagagcataccactcaaatcgaagcc
attgttccagttgatgttgcagcgtttttacttaacgaaaaacgtaaagccattcgcatt
accgaagaacgtcatggtgtagaagtgtatgttattcctgatgcgcacatgcaaacacct
gaatatcgagtgatccgccgtaaaaatgatgatgaaatcaccgagtcaagctttaagcgc
gttgaagcacctaaatcagaattgtacgagccacgtaaattagagcgtaccttagcacca
gagccagctttaaaaggttttgctgcaccgcaaaaaaccgttgaagagcctaaagctgct
ccagttaagcctgtagttgctgctacacctggtttattcagccgcattacatctgcaatt
agtgctttctttagcagtgatgaaactgaaacaaaagaaaagcctgtagttaagcctgca
gtaacacaagataaaactaaccctcgtcgcagccgtcgtaatgatagtggtgataatcgt
aatgaaagtcgcaatgacagccgtaacgatactcgtcgtaaacgtaacgataaagattca
actacaactgatagcaaaaatactcgtggccgtaataagcctactcgtgacaaagatgac
actaaaactgtcagcaaaccagaacctgttgcgaagccagtagtcagtgacgataaaccg
actaaaactgttgcggctgaaaaaacacctaaacaggaagccgctcgtgaacgtcgtcag
cgccgtaatatgcgtagaaaagtacgcattgagaatgagcaaactaatgacgaaacagtt
ttagccactaatttaggtactacgcctaatgaaaccatgccagcggattcaaccaaagat
gtgcgaagtgatgttaacaatgttgagactgctgaattagttgctactgttaatactgaa
gataaagctaattctgaagttaaccactcagataaagacagtaagcctgtgcgtaagcgt
cagcctcgtaaagaaaagcctgctgataaccaatcagcgacagttgaacaagctacaacc
tcagcaactgaagaaacagctgagtttaaagtagacactagtgttgcagcaacagcagaa
acttcagtaccggctataactgcaactgcagcagttgctgtaactatgccagcagatgaa
acggttaacgtgactgaaactgatgagtctgatgatgataaacgtgaaggtcagcgtcgc
agccgccgcagtcctcgtcatcttcgtgcagcaggtcaacgccgccgccgtgatgatgac
gaaggtgcttcttctgataccgcgccagtgttcacacctgttgatgaacttgatagacag
ttaactgaagaactagcacaaactcaggctgctaccgcagccgacgttaatcaacctacc
aaggctgaaccagtgttagagagtaaagctgctaacacatcagttgctgaggtgaaagta
gaagcatcagctgaatcaacaagggttgaagcagtacaaactgctcctatcgttgaaagt
aaagttgaagttgagactaaagccgaaaccgaaaataaagtggttgaagttactactgaa
aaaacggtatcagttacatctgagacgctaccagttgttgaagctgcggtaaaagctgaa
gtaactaaagaagctgaagttattacacccgtaaaagacgtgcagtcaacatcaacggaa
gcaaagccaaccaaagccgcagttaacgcgcctatggcaaagccggccacaatagtgcgt
aaagtggttgagaaagctgtagagccgaaatctgagcaaaccaaagcagaagttgttgtg
ccatcaaaacctgccagcaatagtcgttttggttcaatggtaagttcaactacaactaag
cctacggttgaagttcgtgagcagcaagctatacctcaaggtaaaagctacgctgaaaca
gacaagccagctgcagcaaaatcaaattttgctaatagcgcaactgctgagatgactaaa
ccacagtcataa
DBGET
integrated database retrieval system
