Shewanella glacialimarina: FJ709_11500
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Entry
FJ709_11500 CDS
T07885
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgla03032
]
FJ709_11500 (topA)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_11500 (topA)
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FJ709_11500 (topA)
DNA replication proteins [BR:
sgla03032
]
Prokaryotic type
DNA Topoisomerases
FJ709_11500 (topA)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FJ709_11500 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Zn_ribbon_recom
Toprim_4
YjeF_N
Motif
Other DBs
NCBI-ProteinID:
UCX05071
LinkDB
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Position
complement(2646949..2649594)
Genome browser
AA seq
881 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSSTSDGTPPAKTAAEVRKMSP
EAKAIYKQARDKQALVGRMGINPEKGWAAKYAVLPGKEKVVKELKELAESADQIYLATDL
DREGEAIAWHLQEIIGGDASRYQRVVFNEITQSAIQDAFSKPSTLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDIHADLNTSNAE
QLKMQVLKFQSAAFEPINEAQAKVAVDALKGASYKVSNREDKATSSKPSAPYITSTLQQA
ASTRLGYGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEAVENVREMIGKEFGTKYLPADP
IRYGSKEGAQEAHEAIRPSNVDVQSASMTDMERDAQRLYELIWRQFVACQMTPAQYDATR
LTVVAGDYELKASGRTLRFDGWTRVQPPMSKKNEDTSTLPVVEVGDVLTLDQLLPKQHFT
KPPARYGEASLVKELEKRGIGRPSTYATIISTIQDRGYVRVDNRRFFAEKMGEIVSERLV
ESFKDLMSYDFTASMEQTLDDVAQGKLDWKKVLDGFYGDFTKQLLMAEMDPDEGGMRLND
PVLTDIECPTCQRKMGIRTGSTGVFLGCSGYALPPKERCKTTVNLTSGDEAISDNEDAET
DALRAKHRCGKCGTAMDGYLIDESRKLHVCGNNPSCDGYEIEKGQFKIKGYEGPLIECDR
CSHDMELKNGRFGKYFGCTNTECKNTRKLLRSGEAAPPKEDPIFLPELKCTKSDAHFVLR
DGAAGIFLAASTFPKSRETRAPLVEELVQYRELLWDKYAFLADAPVEDDDGNKASVRFSR
KTKEQYVATDVDGKATGWSAKFIGGKWVSESTKSPKKKTKK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgttagttattgtcgaatcgccggctaaagccaagacaattaataagtat
cttggtaaagatttcatcgtgaagtctagtgtaggtcacatacgtgatttaccgacttcc
tccacatctgatggtactcctccagctaaaactgctgcagaagttcgtaagatgtcacct
gaagccaaagctatatataagcaggctagagataaacaagcgcttgttggccggatggga
attaatcccgaaaaaggctgggcagctaaatatgccgtattacccggtaaagaaaaggta
gtaaaagaattaaaagaacttgcagagtccgctgaccaaatctatctcgcaaccgatttg
gaccgtgaaggggaagctatcgcctggcatttacaggaaattatcggtggtgatgcttca
cggtatcaacgagtggtatttaatgaaatcactcaatcagcaattcaagatgcttttagt
aagccatctacattagataccaatatggtcaatgcccaacaagcacgtcgtttcctcgac
cgtgttgtgggctttatggtatcgccgctgttgtggaaaaaagtcgcacgtggtttatct
gctggtcgagtgcaatctgttgcagtcagattagtggttgagcgagaaagtgagattaaa
gcatttgtacctgaagagttttgggacatccatgctgacttaaacaccagtaatgctgaa
caattgaaaatgcaggtgttgaaatttcaatccgcagcatttgaacccattaatgaagct
caagccaaagttgctgttgatgcgttaaaaggagcttcttacaaagtttctaaccgcgaa
gataaagcgacatcaagcaaaccttcagcaccttatatcacgtctacattgcaacaagct
gcaagcacgcgtttgggttatggcgtgaaaaaaaccatgatgatggcgcagcgtttgtat
gaagcggggcatattacttatatgcgtaccgattcaaccaacctaagccaagaagcggta
gaaaatgtacgcgagatgattggcaaagagtttggtaccaagtatttacctgcagatcct
atacgttatggtagcaaagaaggtgctcaagaggcgcatgaagctattcgtccttcaaat
gtggatgtgcaatctgcgtcgatgacggatatggagcgtgatgctcaacgtctttatgaa
ttaatttggcgtcaatttgtggcgtgtcaaatgacaccagctcaatatgatgcaacacgt
ttgactgtggttgccggtgattacgaattaaaagccagtggtcgtacattacgctttgac
ggttggacacgtgtacaaccgccaatgagcaagaaaaacgaagacactagcacattgccc
gtagtggaagtgggtgatgtactgacgcttgatcaacttttaccaaaacaacactttact
aaaccgcctgctcgttacggtgaagcatcattagtcaaagagttagagaagcgtggtatt
ggtcgaccttcaacttacgcgactattatttcaactattcaggaccgcggttatgtgcga
gtggataatcgccgtttctttgctgaaaaaatgggtgaaatagtcagtgaacgtttagtt
gaaagctttaaagatctaatgagttatgactttaccgccagtatggaacaaacccttgat
gacgtcgctcagggtaagctagattggaaaaaagtgctcgatggtttctatggtgatttt
accaagcaattattgatggcagaaatggacccagatgaaggcggcatgcgtttaaacgat
ccggttttaaccgatatcgagtgcccaacgtgtcaacgtaaaatgggcattcgtactggt
tcaactggggtattcttaggttgtagtggctatgccttaccaccaaaagagcgttgtaaa
acaacggttaatttaacttcaggtgatgaagccattagtgataatgaagatgcagaaacc
gatgcacttcgtgctaagcaccgttgtggtaagtgcggcaccgcaatggacggctattta
attgacgaatcacgtaaactgcatgtttgtggtaataacccaagctgtgatggttacgag
attgaaaaaggtcagtttaaaataaaaggctatgaaggtcctttgattgaatgtgatcgt
tgcagtcatgatatggaacttaaaaatggccgtttcggaaaatactttggttgtactaat
actgaatgtaaaaacactcgcaaactgttaagaagtggtgaagctgcgcctccaaaagaa
gatcctatcttcttaccggaacttaaatgtactaagtctgatgcgcactttgtgttacgt
gatggcgcggctggaatatttttagcggcaagtaccttcccaaaatcccgtgaaacccgc
gcgccgcttgttgaagagctggtgcaatatcgtgagttattatgggacaagtacgccttt
ttagccgatgccccagtcgaagatgatgatggtaataaagcctctgtcagatttagccgt
aaaacgaaagagcagtatgttgctaccgacgttgatggtaaagccactggttggtctgct
aagtttattggcggcaagtgggtgagtgagtcgacaaagtcacctaagaaaaaaactaaa
aagtag
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