Shewanella glacialimarina: FJ709_11630
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Entry
FJ709_11630 CDS
T07885
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FJ709_11630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_11630
Enzymes [BR:
sgla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FJ709_11630
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FJ709_11630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_30
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UCX05094
LinkDB
All DBs
Position
2681311..2685120
Genome browser
AA seq
1269 aa
AA seq
DB search
MNNAKSANITVSALDALNLPFAGSSLIEASAGTGKTYTISGLYLRLLLGHGGQAPLLCEQ
ILVVTFTNAATEELRDRIRKRIQIAYKRFLGVATDDHFVEQLYQQIPEDERAIALKRFDL
ALKSLDEGAIFTIHGFCQRILADMAFESSLLFESEFTLDDSEYLHHAVRDFWREACYPLP
LFLAQQISNTFGEPEKLAQKVRALLGASQAIASDTPPDFIKLSESLVQSLQRFKLRWPAE
HPAMLALLMDLPLNGQRFGKKADGYPKLLQLFDDLTHWVAYGQGLPPLKPMEQLALSELR
LNKGGEIPSAQDAPLLDHIERLMALITAIIPAFLVRAQAGIKQRFVQQKHQRNLMTPDDL
LTSLAQALEHNPDTLPNAIAKRFPIALIDEFQDTDPLQFQIFNTVYQAPQFDPHSAQADG
SQTGASGITKPQSATPNNAIGILMIGDPKQAIYAFRGADIFTYINARNQTEAHYSLDTNY
RSSAQLVNGVNHFFNQHDDPFISDAIPYDPVKTPVSAQKKILIEATEQTAALRIKLLQEN
EQTGLNKTTARQLLANDAAAEITRLLTEAQAGECVINGDALIAKNIAVLVRDRNEAAVIK
AALSARNIGAVFLSRDSVFDTNEAKETALILRALANPKDERAIRAALATELIGYNANKIH
QFNQDESLRQKVLDLFAHWHQLWLSSGIMPALLSLANDTRLVHRLLAKPANAISSEPDID
KDASVNSTADDDEFISISASGERRLTDFRHLGELLQQKATELDGSSALINWFEQQLLGTQ
GQDEQQLRLESEQNLVQIVTIHKSKGLEYPICFVPFISLARGGNRRPEPMLYHHQGKLIW
DIYGSDEGWEQYKRETLAEDLRLLYVALTRPIYACYLYIANQSRQLKAGISSQLHEIGIG
YLLGITDKDCDGEQMAAKVAQLATIDAISVSQVTDIIDNTVLVDNVDTKQTYAAKQTSRK
LGLPWRVGSYSGLVKHLAHEKTVPGADDEDFSEETLIEVELPAAHVLDRFSFERGANAGS
FMHLVLELFDFTQADTELQPALIKAMQQYGFDQQVWLVPLTLWYQQILATPLVKTLLNTS
NQAGQHPIFLQELTPQQTLVEMEFYIPITELHAEKLNRLLAQFGYENNFSFDTLKGMLKG
FIDLTFEHQGQFYIADYKSNHLGHQLHDYSQTSMAKAINSHRYNLQYILYTLALHRYLRL
RMPNYDYHQHIGGCFYLFLRGMSPDAVGSGVFFDKPDAALIDQLDKLFSHPELDTPASQH
ISHNNAENR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgcaaaatcagctaatattaccgtgtcagcgctggatgcgctcaacttgcct
tttgcgggttctagcctgattgaagccagcgcgggcacaggaaaaacctatactatttcg
ggtttatatttgcgtttgctgctcggccatggcggacaagcccccttgttgtgtgaacaa
attttagtggtaacctttaccaatgccgccactgaagagctgcgagaccgaatacgtaaa
cggatccaaattgcttacaaacgttttttaggcgtcgcgactgatgatcactttgttgaa
cagctttatcagcagatccctgaggatgagcgagccattgccctaaaacggttcgatttg
gcgcttaagtcactcgacgaaggcgctattttcactattcatggtttttgtcagcgcatt
ttggccgacatggcatttgaatcgtcattgctatttgaatcagaattcaccttagacgac
agcgaatacttacaccatgccgtgcgcgatttttggcgtgaagcctgttatccgctgcca
ttatttttagcacaacagatcagtaatacttttggcgaaccagaaaaactcgctcaaaaa
gtacgtgcgttattaggtgcaagccaggcgatagcctctgacaccccgccagatttcatt
aaattatctgagtcactagtgcaaagtctgcagcgctttaaactgcgctggcctgctgaa
cacccggctatgctagcactgttaatggacttgcctttaaacggtcaacgctttggtaaa
aaagccgatggttatcccaagttactgcaactgtttgacgatttaacccactgggtggct
tatggccaaggtttaccgccgttaaagccaatggagcaattagcgttatcagaactgaga
ttaaataaaggcggtgaaatcccctcagcgcaagatgcgccgctactggatcatatcgag
cgtttaatggcgttaattactgccattattcctgcatttttagtccgcgcccaagccggc
attaaacaacgatttgtacaacagaagcatcagcgtaatttgatgacgcccgatgacttg
ttaactagcctggcgcaagctcttgagcataatcctgacaccttgcctaacgcgatagca
aagcgctttccaattgcgctaatcgatgagtttcaagataccgacccattacaatttcaa
atatttaataccgtctatcaagcgccacaatttgatccgcatagcgcacaagcagacggt
tcacaaacgggcgcctcaggcattaccaaaccacaatcagccacgcctaataacgccata
ggcatcttgatgattggcgatcccaaacaagccatttatgcctttcgcggtgcggacatt
tttacttatattaacgcccgtaatcagacagaagcgcactatagtttggataccaattac
cgctcttcagcgcaattagttaacggtgttaatcattttttcaatcagcatgacgatcca
tttatcagcgatgctattccctatgatcccgtcaaaacccctgtatcagcacaaaaaaag
atattgattgaagcgactgaacaaacagcggcactgcggataaaactgcttcaagaaaac
gagcaaactgggctaaacaaaaccaccgctcgtcaattgcttgccaatgatgcggccgca
gaaataacccgcttactgacagaagcacaggcgggcgaatgtgttatcaatggcgatgca
ttaattgccaaaaatattgccgtattggtcagggacagaaacgaagccgctgtgataaaa
gcggccttaagtgcccgcaacattggcgcggtatttttaagtcgcgatagtgtgtttgat
accaatgaagccaaagaaaccgcccttattctgcgagcattagctaaccccaaagatgag
cgcgccattcgtgccgcgctggccacggaattaataggctataacgccaataaaattcat
caatttaatcaggacgagtcactgcgtcaaaaggtgttggacttatttgctcactggcat
cagttgtggctatcaagcggcattatgcctgcgctacttagtctggccaatgacactaga
ctagtgcatcgactattagctaagcctgccaacgctatatcgtccgaacctgatattgac
aaagatgctagcgtaaactcgacagcagatgacgatgaatttatcagcattagcgcaagt
ggcgagcgccgcttaaccgactttcgtcacctaggtgagttactgcaacaaaaggccact
gagttagacggtagcagtgcattaatcaattggtttgaacaacagctgctcggtacccaa
ggtcaagatgagcaacagctgcgtttagaaagtgagcaaaatctggtgcaaattgtcacc
attcataaatcaaaggggcttgagtaccccatctgttttgtgccttttatcagtctcgcc
agaggcggtaatcgtcgtcctgagccgatgctatatcatcaccagggtaaattaatttgg
gatatttatggcagtgatgaaggttgggagcaatataaacgtgaaaccctagccgaagac
ttacgactattatatgtggcgttaacccgtccaatttatgcctgttatctgtatatcgcc
aatcaatcacggcaattaaaagccggcataagctcacagctgcatgaaataggcataggt
tatttattaggcattacagataaggattgtgatggcgaacaaatggcagcaaaagtggct
caattagccacaattgatgccatcagtgttagccaagtgactgacattatcgacaatacg
gtattagtcgacaatgttgatacaaaacaaacctatgctgccaaacaaacctctcgaaaa
cttggcttaccttggcgagtgggcagttattctgggttagtaaaacatcttgcccatgaa
aaaaccgttcccggcgccgatgatgaagactttagtgaagaaacacttattgaggttgaa
ctgcctgctgcacatgttttagaccgatttagctttgagcgcggcgccaatgccggtagc
tttatgcatttggtattagagctatttgatttcacccaggcagacactgagctgcaaccc
gccttaatcaaagcgatgcagcaatacggttttgatcaacaagtttggttagtgccttta
accttgtggtatcaacaaatcctggccactcccttagtgaaaaccttgctaaatacatca
aaccaagcgggccaacatcctatttttttacaggaattaaccccacaacaaaccctggtg
gaaatggagttctatataccgatcactgaactgcatgctgaaaagcttaatcgcttatta
gcacaatttggttatgagaataacttcagctttgacaccttaaagggcatgttaaaaggg
tttatcgatttaactttcgaacatcaaggtcagttctatattgcagattataagtccaac
cacttaggccaccagctgcacgattacagccaaacatcgatggctaaagccatcaatagt
cacagatataacttacagtacatactttatacgctagccctgcatcgatatttacgcctg
cggatgccaaactatgactatcatcagcatattggtggctgtttttacttatttctcagg
ggtatgagtcctgatgctgttggctcaggggtcttttttgataaacctgacgccgccctt
atcgaccagttggataagttattttctcatcctgaactggacactccagcaagccaacac
atcagtcataataacgcggagaaccgataa
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