Shewanella glacialimarina: FJ709_11980
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Entry
FJ709_11980 CDS
T07885
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03030
DNA replication
sgla03430
Mismatch repair
sgla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJ709_11980 (dnaE)
03430 Mismatch repair
FJ709_11980 (dnaE)
03440 Homologous recombination
FJ709_11980 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgla03032
]
FJ709_11980 (dnaE)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_11980 (dnaE)
Enzymes [BR:
sgla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FJ709_11980 (dnaE)
DNA replication proteins [BR:
sgla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FJ709_11980 (dnaE)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FJ709_11980 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UCX05155
LinkDB
All DBs
Position
complement(2763225..2766701)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDYSMTDGVAKVKPILAAAEAQGMAAIALTDQNNFCGLVKFYGGAHAV
GIKPIVGADFWMRVPGFEKELCALTIIAMDNDGYQNLTQLISEAYLRGQVDGRVVIDQDW
LVTYNKGILLLSGAKEGDIGKALLKGNQGQVDDLVNFYQTHFSDRYFLELIRTDRADEER
YLHMAVELAAKTGIPVVATNQVVFLKADDFEAHEIRVAIHDGYTLVDPRRPKTYSNAQYL
RSEDEMCELFKDIPSAISNSVEIAKRCNVTIRLYEYFLPNFPTGDLSIEDFLVAASVKGL
EERLEFLFPDPTVRAQRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWGKDQGIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKMIPAEPGMTLAKAFEVEPA
LPEAYAADEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRITDFAPLYCDAEGLNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLAKQGKEPVRIEAIPLADPACFKLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREA
VSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
QFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGQFKFTVDDDLNIVYGIGAIKG
VGEGPVDSILEARKDGPFIDLFDFCARIDLKKLNKRVIEKLICAGALDDLGPHRASMMAT
LPEAIRAAAQHAKAQEIGQHDMFGLLNDEPDDNKQNFVECTPWPDKIWLEGERDTLGLYL
TGHPINQYLAELKQYTSARLKDIHPTERGKTVKVAGLVVATRVMITKRGSKMGLVTLDDK
SARLEVMLFTEPFEKFGHLLEKDRILICEGDVSYDDFAGGNRMNGRNIIEIGEARSHFAK
AVELNIHADILSPEWLTNFQQILMPWKSGAVPVVINYTKNAAAGRLVLGDEWRVNPSDDL
MLALETQLGSTNVKIVFN
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatttgcgtgtccacagtgactattccatgacagatggt
gtcgctaaggtgaaacctatcttagcagcagcagaagcgcaggggatggccgcgatcgca
ttgacagatcaaaacaacttttgtggtttagtgaagttttatggtggcgcacatgcagtg
ggtattaaacctattgtcggtgctgacttttggatgcgtgtgcctggttttgaaaaagaa
ttatgtgcacttaccattattgcaatggataacgacggttaccaaaacctcacccagtta
atcagtgaagcctatcttcgcggtcaagttgatggtcgagtcgttatcgatcaagactgg
cttgtgacctataacaaagggattttgcttttatcgggtgccaaagaaggcgatataggt
aaagctttattaaaaggcaaccaaggccaagttgacgacctcgtaaacttttatcaaacg
cattttagtgatcgctattttcttgaactcattcgcaccgaccgtgcagacgaagagcgc
tatctacacatggcggttgaacttgccgccaagacaggcattcctgttgttgctaccaac
caggtggtgtttttaaaagccgatgattttgaagcgcatgaaattcgcgtcgctattcac
gatggctataccctagtagaccctagacgccctaaaacctacagtaacgcccagtatctt
cgcagcgaagatgaaatgtgtgagctttttaaagatattccttcagcgattagcaatagt
gtcgaaatagccaaacgctgtaacgtcaccattcgattatatgaatactttctgccgaac
tttccaacgggcgacctatcaatagaagacttcttggttgccgcgtcagttaaaggctta
gaagagcgtcttgagtttttatttccagatccaaccgtgagagcccaaagaaggcctgag
tacgatgagcgcctagaaattgagcttaaagtcatcaaccaaatgggattcccgggttat
ttcttaattgtgatggagtttattcaatggggtaaagatcaaggcattcccgtaggccct
ggtcgtggttcaggtgcgggatcgttagtcgcttatgcgcttaaaattactgatttagat
ccccttgaatatgatttactgttcgagcgtttcttaaaccctgaacgtgtatccatgccc
gatttcgacgtcgatttttgtatggatcgccgcgatgaggttatcgaccatgtagccgag
ctgtatggccgtgaagcggtatcgcaaattattacctttggtactatggcggctaaagcg
gttgtacgcgatgttggccgtgtattaggtcatccatatgggtttgttgaacgtctaact
aagatgatccccgcagaacccggcatgacactggctaaagcgtttgaggtggaacctgcg
ctgcctgaagcctacgccgctgatgaagatgtcaaagagcttatcgacatgtgtcgccgc
ttagaaggtgtgacgcgtaacgctggtaagcatgccggtggtgtggttattgcgccgact
cgtataacggactttgcgccactatattgtgatgcagaaggcttaaacccggtcactcag
tttgataaaaatgacgtagaaaccgccggtttagttaagttcgacttcttggggttacgt
actttaaccattattgactgggcattgcagatgatcaatccgcgcttagccaaacaaggt
aaagaaccggttcgcatcgaagcgattccgctggccgatcccgcttgctttaaattacta
caacgttatgaaaccaccgcagtattccagttagaatctcgcggcatgaaagatctgatt
aaacgtctacagcccgattgttttgaagacatgattgcactggtagcccttttccgccca
gggcctttgcaatcaggcatggtagataactttatcgaacgtaaacatggtcgtgaagcc
gtatcttatcccgatgctgaatatcagcatgaatcgttaagagaattactgtcaccgacc
tacggcattatcttgtatcaagagcaggtaatgcagattgcccaggtgctgtcgggttat
accctaggcggcgcggacatgcttcgccgagctatgggtaagaaaaagcctgaagaaatg
gctaagcagcgtggcacgttcaaagaaggtgcgattaataacggcgttgacggcgacttg
tcgatgaaaattttcgacttggttgaaaagttcgccggttatggttttaacaaatcgcat
tctgctgcttacgcattagtttcttaccaaacattgtggcttaaaacccattatccagcg
caatttatggccgcggtaatgtcggctgatatggataacacagataaaattgttaccttg
gtcgatgaatgcgagcgcatgggattaccgcttattccgcccgatgtgaacaaaggtcaa
ttcaagttcaccgttgatgatgacttaaatattgtgtatggcataggtgcgattaaaggc
gtgggtgaaggcccagtcgattctattcttgaagcgcgcaaagatggaccttttatcgat
ttatttgatttttgtgcccgtatcgatctaaaaaaactcaataaacgggttatcgaaaaa
ctgatttgtgccggtgcattagatgaccttggcccgcatcgtgcctcaatgatggccaca
ttacctgaagccattcgcgcagcagcgcaacacgcgaaagcgcaagaaatcggtcaacat
gatatgtttggtttgcttaatgacgagccagacgataataagcaaaattttgttgaatgt
actccctggccagacaaaatatggttagaaggggagcgcgatacccttgggttgtacttg
accggccatccgattaatcagtatttagctgagttgaaacaatatacttcagctcgctta
aaagacattcacccgactgagcgcggtaaaacggtcaaagtggcgggtttagtggttgcc
acccgcgtgatgatcaccaagcgcggctcaaagatgggcttggtgacattagatgataaa
agtgctcgcttagaggtgatgttattcactgaaccatttgaaaaattcggtcatttactt
gaaaaagatcgtattttaatctgtgaaggtgatgttagctatgatgattttgccggtggc
aatcgcatgaatggccgtaatatcattgaaattggtgaagcaagaagccattttgctaaa
gcggttgaactcaatatccatgcagatatattatcgcccgaatggttaacgaattttcag
caaatactaatgccgtggaaatcaggcgctgtgccagtagtgataaattataccaaaaat
gcagctgcaggaaggttagtgctaggtgatgaatggcgcgttaatccatcagatgatttg
atgctggccctagaaacacaactgggttccactaatgttaaaattgtctttaactag
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