Shewanella glacialimarina: FJ709_16025
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Entry
FJ709_16025 CDS
T07885
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_16025
Enzymes [BR:
sgla01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
FJ709_16025
DNA repair and recombination proteins [BR:
sgla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
FJ709_16025
Prokaryotic type
FJ709_16025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
UCX05858
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All DBs
Position
complement(3674744..3676195)
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AA seq
483 aa
AA seq
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MSIAVVWLKRDLRLSDHQPLVNAINSGLPVLLVYCFEPILVNDPHYSARHWQFIIESLTD
MQTKLPQGSLLCSADPAIQTLSDLHHKYGITQLFSHQEVGLKVTFDRDIDIKHWCDIEDI
AWYETPYAAVIRGLPNRQHWDKYWQQVMRYQFESINLTTVKWLIEPLACHSLADVAQHFN
QDKGDFQLGGENMAWQTLESFFQGRGQSYAYSLSSPELSQQHCSRLSSYLAWGNISLRQV
YQHLLSHWHTKGWRRSLVALSSRLHWHCHFIQKFESESEMEFRPVNRGYTNLPRAHGDDA
DNKLLAWEQGQTGVPMVDACMRCLHHTGYINFRMRAMLVSFLTHHLQIDWRLGVKHLARL
FLDFEPGIHYSQFQMQAGVTGINTIRIYSPVKQGLEKDPQGEFVKRWVPELAEIPAPLIH
SPWQLSAMEQMMYQVNIGTDYPAPIVDLGETYKAAQSLLWQWRTKPEVKREAYRLLQRHV
RPD
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctatagccgttgtatggttaaaacgagatttaagactatctgatcatcagccttta
gttaatgcaattaatagcggcttaccggtgctgttggtttattgctttgagccaatttta
gttaatgacccacattattcggcaaggcactggcaatttattattgaatctctgactgat
atgcaaactaagttgccccagggcagtttactgtgcagtgcagatccagccatacaaact
ttgtctgatttgcaccataagtatggtattacgcagttattttcccatcaagaagtgggt
ctaaaggtgacctttgatcgtgatattgatattaaacattggtgcgatatagaagatatt
gcgtggtatgaaacgccctatgcggctgttattcgcggtttacctaatcgtcaacattgg
gataagtactggcaacaggtgatgcgttatcaatttgagtcgataaacttaaccacagta
aaatggctaatagagccgcttgcttgccattcgctggctgatgttgcgcaacactttaac
caggacaaaggtgactttcaacttgggggcgaaaacatggcatggcaaacgcttgaatca
ttttttcaaggtcgtggtcagtcttatgcctatagtttgtctagcccagaactgagccag
cagcattgctcacgtttatccagttatctggcctggggtaatatcagtctgcgtcaagtt
tatcagcatctgcttagtcattggcataccaaaggctggcggcgaagcttagtggcactg
agttcgagattacattggcattgtcattttattcagaagtttgaaagtgaatctgagatg
gaatttcgtccagtaaatcgaggttataccaacctaccacgtgctcacggtgatgatgct
gataataagctgcttgcatgggagcaaggtcaaactggcgtgcctatggttgatgcttgt
atgcgctgcttgcatcataccggttatattaattttagaatgcgcgccatgttagtcagt
tttttaactcatcacctgcaaatagattggcgtttaggggttaaacatttagcgcggtta
ttcttagatttcgagccaggtatacattacagccaatttcagatgcaagcaggggtgacc
ggtattaatactattcggatttatagtcctgttaagcaagggctggaaaaagatcctcaa
ggtgaatttgttaaacgttgggtgccagaacttgccgaaatacctgcacctttaattcat
tcaccttggcagttatctgccatggagcaaatgatgtatcaagttaacataggtacagat
tatcctgcaccgatagtcgacttaggtgaaacctataaagcggcccaaagtttactttgg
cagtggcgcactaagcctgaggttaagcgggaagcttatcgacttttgcaacgtcatgtg
aggccagattag
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