Shewanella glacialimarina: FJ709_16290
Help
Entry
FJ709_16290 CDS
T07885
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sgla
Shewanella glacialimarina
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgla03016
]
FJ709_16290 (thpR)
Enzymes [BR:
sgla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
FJ709_16290 (thpR)
Transfer RNA biogenesis [BR:
sgla03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
FJ709_16290 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
2H-SAK
Motif
Other DBs
NCBI-ProteinID:
UCX05907
LinkDB
All DBs
Position
3744375..3744944
Genome browser
AA seq
189 aa
AA seq
DB search
MKSSHPIAAQRLFIGFSVNKTDNRQFFDIQQKLTTCINTEALPVTQSNMHITLAFLGQVS
HSSTPRLLDALDKLIKPVFHLTLDTLCLWIQPGIICAQGIADDILLNMADAAQQVCLHLG
LHQSQWHYRPHITLFKKADRLDYAQQRLINLDHKLPITVSPTHLHLYRSVRTKQGEQYNI
LHSWPLQND
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaagtcacccaatagctgcacaaagattatttattggatttagcgtcaacaaa
acagataatcgtcaattttttgatatacagcaaaagcttacaacatgtattaatacagaa
gctttacccgtaacacaatcaaatatgcatattactttagcttttcttggccaagtgagt
cattcatccacacccagactattggatgctttagataagctaataaaacctgtatttcat
ttaacgttagacacactttgcctatggattcagccaggcataatatgtgcccagggcatt
gccgacgacatactgcttaacatggctgatgccgctcaacaagtttgcttgcacttaggt
cttcaccaaagccaatggcactatcgaccacatatcaccttgtttaaaaaagctgacaga
ctagattatgcgcaacaaagattaattaatctggatcataagttacccatcacagtctct
ccaacacatttacacttgtatcgttcagttagaaccaaacaaggcgagcaatataacata
ttgcacagttggccattacaaaacgattga
DBGET
integrated database retrieval system
