Shewanella glacialimarina: FJ709_18135
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Entry
FJ709_18135 CDS
T07885
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJ709_18135 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgla03019
]
FJ709_18135 (recQ)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_18135 (recQ)
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJ709_18135 (recQ)
Messenger RNA biogenesis [BR:
sgla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJ709_18135 (recQ)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FJ709_18135 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UCX06247
LinkDB
All DBs
Position
complement(4160883..4162706)
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AA seq
607 aa
AA seq
DB search
MTSQPVQSTHADLLAAQLQQVFGYRDFRDGQREVIEQALSGNDTLVIMPTGGGKSMCYQL
PALVMPGLTIVVSPLISLMKDQVDSLRQSGVSAAYLNSSLPREQSAAILRQLHQGEIKLL
YVSPERLLRPDFIERMHELTISLFAVDEAHCISQWGHDFRPEYAALGALKQHFPHIPLMA
LTATADHATRQSICERLHIQPYTLLASFDRPNIRYTVAEKLNAANQLRQYLQVQNGASGI
IYCSSRRRVDEVSERLRLQGFNAQGYHAGMSQDDRADIQDKFLKDQVDIVVATVAFGMGI
NKSNVRFVVHYDIPKSIESYYQETGRAGRDGLEAEAYMLFDPADIGRVRHLIEQSEPGPQ
QQVEFHKLHTMAAFAEAQTCRRQVLLHYFDESASEPCGNCDICLDPPKRYNGTEDAQKVL
SCVFRLQQRFGMHHIIDVLRGSKAANVMDRGHDKLTTWGIGADKSAEHWLSVLRQLIHLG
LASQDITRGSSIRLNPAARPILKAEMALMLAEPRIQLLDVKRKPNTRSVQQYDRKLFARL
KLLRRELAEQHDIPPYLVFNDATLAEMSAMLPTSPGEMLAVNGVGQIKLDRFGGEFLDEI
SDYLANS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacatcacaacccgttcaatctactcatgctgatttattagctgctcaattgcagcaa
gtctttggttatcgcgattttcgcgatgggcagcgtgaggttattgagcaagctttatcc
ggcaacgataccttggtgataatgccaactggtggtggtaaaagtatgtgctaccagtta
ccagcactcgttatgcctgggttaactattgtggtgtcaccgttaatatccttgatgaaa
gatcaagtcgatagcttaaggcaaagtggggttagtgcggcgtatttaaattcatcctta
ccacgggagcaaagcgccgcaattttgcgtcagttgcaccagggcgaaataaaactgctt
tacgtttctcctgagcggttattaagaccggactttattgagcgtatgcacgagcttacc
atttcattatttgccgttgatgaagcgcattgtattagtcaatggggtcatgattttcgg
cctgaatatgctgcattaggtgcgcttaaacagcatttccctcacattccattaatggca
ttaacggccacagcagaccatgctacccgtcagagtatttgtgagcgtttgcatattcag
ccctatactctattagccagttttgatcgtccaaacattcgctataccgtagcggaaaaa
ctcaatgcagcgaatcaattacgccaatacctccaagttcaaaatggcgccagtgggatt
atttattgcagcagtcgtcgccgcgttgatgaagtgtctgagcgcttacgcttacaaggt
tttaatgcgcaaggttaccatgcgggcatgagtcaggatgacagagcggatatacaggat
aaatttttaaaagaccaagtcgacatagtcgttgcgacggtggcatttggtatggggatc
aataaatcgaatgtgcgatttgtggtgcattatgatattcctaaaagtattgaatcctat
tatcaagaaactggcagagccggtcgagatgggttagaagccgaagcctatatgttattt
gaccccgccgatatcggcagggttagacacttgattgaacaatctgaaccgggtccacag
caacaggttgagtttcataagttacataccatggcagcgtttgctgaagcgcaaacttgc
cgtcgtcaggtactactgcattattttgatgagagtgcctctgaaccctgtggtaactgt
gatatttgtcttgacccacctaaacgatacaacggtactgaagatgcgcaaaaagtgttg
tcctgtgtgtttagactacaacaacgctttggtatgcatcatattattgatgtgctaaga
ggttctaaagctgccaatgtgatggataggggccacgacaagctgacaacctggggaatt
ggtgctgataagtccgccgaacattggttaagtgtacttaggcaattaattcaccttggc
ttagccagtcaagacattacccgcggctccagtattcgcttaaaccccgccgcccgaccg
attttaaaagctgaaatggcgttgatgttggctgaaccacgtattcagttattagatgtt
aaacgtaagcccaatacccgttcagtgcagcaatatgatcgtaagctgtttgcacgctta
aagctattacggcgagagcttgctgaacaacacgatataccgccttatttggtgtttaat
gatgcaacgctggctgaaatgtctgccatgttacccacaagtccaggtgaaatgctggct
gtaaacggcgtaggccaaattaaactagaccgcttcggtggtgagtttcttgatgagatc
agtgactatttagccaacagctaa
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