Shewanella glacialimarina: FJ709_18775
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Entry
FJ709_18775 CDS
T07885
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJ709_18775 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgla03021
]
FJ709_18775 (rpoB)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_18775 (rpoB)
Enzymes [BR:
sgla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJ709_18775 (rpoB)
Transcription machinery [BR:
sgla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJ709_18775 (rpoB)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJ709_18775 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UCX06366
LinkDB
All DBs
Position
complement(4291918..4295949)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIK
SFSGYSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIMLRALDFSTQDILDLFFERIQFKIKKDSLVMS
LVPDRLRGETASYDIKDAEGSLLVEAGRRITARHIKQLEKTNTTELEVPVDYIVGKYAAQ
DYIDEDTGEVLVTANSEISLEDLANLSLAGIKEIDTLFINDLDHGAYIADTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLEIAEDEGSGV
LSKEDIVCVMKKIIEIRNGYDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVEGVI
TDEVEYLSAIEEGRYVIAQANIEVDAAGRMVEDQIACRHKGESTFMRAADVQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVDSGVVVVAK
RGGVVDYVDASRIVVKVNEDELRAGEAGIDIYNLTKYTRSNQNTCINQRPCCFAGDPVVR
GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRALEIEDMHVRQARKD
LGEEFKILEDGVLGRARNLLLAAGFSEAKLAELPRKDLLIQVIDDEAKQTELEQLAEQHE
ELRADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPVEDMPYDEEGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQREIA
VLRDYIKQVYELGDDVLQRVDIDSFTDDEVVRLATHLKGGIPIATPAFDGAKEKEIKQML
ALAGLPESGQLTLCDGRTGNEFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQG
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagattttggtaagcgtccaaag
gttttggacatcccttatctattgtctatccagttagactcttttaagaagttcaccgat
caagatcctacgggtgaacgcggttttgaagcggcatttcgtagcgtttttcctatcaag
agcttttctggttattctgagctgcaatatgtcagctacaaactaggcgagccagttttt
gatgtgaaagaatgtcagatccgtggtgtcacttattcagctccactacgcgttaaatta
cgcatggtgttgtttgatcgtgaagctgcagctggcacagtaaaagatatcaaagaacaa
gaagtctacatgggtgatatcccattgatgactgataacggtacgttcgttatcaacggt
actgagcgtgttattgtgtctcagttacaccgtagtcctggcgtattctttgatcatgac
cgtggtaaaacccactcttccggtaaagtgctttataacgcacgtattattccttaccgt
ggttcatggcttgactttgaattcgatcctaaagacgcattattcgtccgtattgaccgt
cgtcgtaaattacctgcgactatcatgctacgtgcgttagatttttctactcaagacatc
ctagacttattctttgagcgtattcagttcaagattaagaaagattctttagtgatgtca
ttagttcctgatcgcttacgcggtgagacagctagctatgacattaaagatgctgaaggc
agtctgttagttgaagctggccgtcgtattactgcgcgccatattaagcaacttgaaaaa
accaacaccactgagcttgaagtgccagtggattatattgttggtaagtatgctgcacaa
gattatatcgatgaagatactggtgaagtattagtgacagcaaacagcgaaatctcttta
gaagatttagctaatttgtcattagccggcattaaagaaattgatacgttatttatcaat
gatcttgatcatggtgcttatatcgcagatacactgcgcatagattcaacaactaaccgc
ttagaagcgctagttgaaatctaccgtatgatgcgtcctggcgagccaccaaccaaagat
gctgctgaaggtttattccaaaacctattcttcagtgaagaacgttatgacttatcaaaa
gtaggtcgtatgaagtttaaccgtcgtcttgagattgctgaagatgaaggttcaggcgtt
ctatcgaaagaagacatcgtttgtgttatgaagaaaatcatcgaaatccgtaacggttac
gatgaagtcgacgatattgaccacttaggtaaccgtcgtattcgtagcgtaggtgagatg
gctgaaaaccaattccgtgttggtctagtccgtgttgagcgtgcggttcgtgaacgtcta
tctttaggcgatttaaacgaattaatgccgcaagacttaattaacgctaagccaatttct
gcggcagtgaaagagtttttcggttcttcacagttgtcacagtttatggaccaaaacaat
ccattgtcagaggtgacgcataaacgtcgtatttctgcccttggtcctggtggtttgacc
cgtgaacgcgcaggctttgaagtccgtgacgtacatccaactcactatggtcgtttatgt
ccaattgagacccctgaggggccaaacattggtctaatcaactcgctagccagttttgct
cgtacaaactcgtacggcttcctagaaacgccataccgtaaagtggtagagggtgtgatt
actgatgaggttgaatacttatcagcaatcgaagaaggtcgttacgttattgcacaggct
aacatcgaagttgatgctgctggccgtatggttgaagaccaaattgcatgtcgtcataaa
ggtgaatctacctttatgcgtgctgctgacgttcagtacatggacgtttcgccacaacag
attatttctgttgcagcgtcattaattccgttcttagaacacgatgatgctaaccgtgca
ttgatgggtgcaaacatgcaacgtcaagccgttcctacactgcgtgctgataagccgtta
gtaggtaccggtattgaacgtactcttgctgttgactctggtgttgtggttgtggctaag
cgtggcggtgtggttgactatgttgatgctagccgtatcgttgttaaagtaaatgaagac
gagctccgcgcaggcgaagcgggtatcgacatttataacctaacaaaatatacccgttca
aaccaaaatacctgtattaaccaacgtccttgttgttttgctggtgatccagtggttcgt
ggtgatgtgttagctgatggtccttctacggatcttggcgaattggccctaggtcaaaac
atgcgcatcgcgttcatgccttggaatggttataacttcgaagattcgatcttaatttct
gagcgcgttgcgcaagaagatcgtttcactactatccatatccaagagctttcttgtatt
gctcgtgatactaaattgggtagcgaagaaatcacagctgatattccaaacgtaggcgag
tctgctttatctaaattagatgaatctggtatcgtttatattggtgcagaagtgaagggc
ggcgatattcttgtgggtaaagtgacacctaagggtgaaacacaattaactccagaagag
aaactactccgagctatttttggtgagaaagcttcagatgttaaggacagctcactacgt
gttcctaactcagtgaaaggcaccatcatcgacgtccaggtatttacccgtgacggcgtt
gaaaaagacaagcgtgctcttgaaatcgaagacatgcatgttcgccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagacggtgtattaggccgtgcgcgtaacttgtta
ttggctgccggtttctctgaagctaagttagctgagttaccacgtaaagacttgctaatc
caagtgattgacgatgaagcaaaacagactgaacttgaacagttagctgaacagcacgaa
gagctgcgcgctgactttgataagaagtttgaaactaagcgtcgtaagatcactcaaggt
gatgatttagcacctggcgtacttaaaattgttaaggtttacttagcggttaagcgtact
atccagcctggtgataaaatggctggtcgtcatggtaacaaaggtgttatctcgaagatt
tgtccagtcgaagatatgccatatgatgaagaaggtaatccagtagacatcgtacttaac
ccattgggcgtaccatcgcgtatgaacatcggtcaggtattagaagtccacatgggtgct
gctgcgaaaggcattggtaataagattaccgctatgcttgaagagcaacgtgaaattgcc
gtacttcgtgattacatcaaacaagtttatgagttaggcgatgacgtgttacagcgcgtt
gatatcgactcgtttactgatgatgaagttgtgcgtttggcgactcaccttaaaggtggt
atcccaatagcaacacccgctttcgatggtgctaaagagaaagagatcaagcagatgctt
gctcttgcaggcttacctgagtctggtcagttaacattatgtgacggccgtaccggtaac
gagtttgagcgtaaagtaaccgttggttatatgtatatgcttaaactgaaccacttagtt
gatgacaagatgcacgcccgttcaaccggttcgtacagcttagtgactcaacaaccattg
ggcggtaaagctcaattcggtggtcaacgtttcggtgagatggaagtgtgggcacttgaa
gcatacggtgcagcatatactctgcaggaaatgctaacggttaagtcagatgacgttaac
ggtcgtactcagatgtataaaaacatcgtcgacggtaaccatcagatgcagccaggcatg
cctgaatctttcaacgtattgttgaaagaaattcgttcactcggtattaatatcgagctg
gatcaagggtaa
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