Sphingomonas glaciei: M1K48_00430
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Entry
M1K48_00430 CDS
T08593
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sglc
Sphingomonas glaciei
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sglc03019
]
M1K48_00430 (hrpB)
Enzymes [BR:
sglc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M1K48_00430 (hrpB)
Messenger RNA biogenesis [BR:
sglc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M1K48_00430 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_25
Flavi_DEAD
Cas3-like_C_2
AAA_19
DUF2470
Motif
Other DBs
NCBI-ProteinID:
UUR08150
LinkDB
All DBs
Position
complement(95551..98091)
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AA seq
846 aa
AA seq
DB search
MFWPQAMAPVTTALPIHSVLPDLLSALRNGSRALLVAPPGAGKTTVIPPALLDQSWCSGQ
VLLLVPRRLAARAAAEFVARGLGEAPGTTVGYQTRLDSRVGKSTRLIAMTHGVFLSRLQA
DPELAGVSAVLFDEVHERSLDSDLALALTLDASAALRPDLRLLAMSATLDGERFAALLGD
PPMIRSEGRSHPLTLVHLGRDAAARIEPQVAAACRRALADSDASVLAFLPGVAEIERTAD
ALGALPPEVILHRLHGQVDPAAQRAALAPPAPGTRKLVLATSIAETSVTLDHVAAVVDSG
LARRPRYDRGAGLTRLVTERASRAAVTQRAGRAARQRPGIAYRLWEEAAFNALPAHDPPE
ILEADLSSLLLTCLGWGEADPSRLPFLDPPPAAALAEARRRLEALGAMIPDGRLTDHGRA
IARVPLEPCLAHMLIEASARGFGRAAADAAVLLTERGLGGNDPDLDLRHRRWRSDRGKRA
EAARGLGKRFLSFVLSGAPQARSRRAVGEGQRQRPSTSLRTNEDVNDLGPAIALAFPDRL
SRRRGPTGEHWQSVGGRGFRLDPASSLASAQWLAVAEVAGAAAGARILSAAAIDEAEVVA
LFGDRIETRHDGAFDPATGGVTPSRSRRLGAIRLSSGPDPTPDPHAIAAALVEGVAEHGL
NLLPWNEDAHALRARAAFAASRDPTLPDLSDEALATRLDEWLSPLAQGRRRLSDIGGGAL
VQALHNLLGWDGQQRLDKLVPSHFRSPAGSAHPIDYAAPGGPTVEVRAQALFGLATHPMV
AGGQVPLTLAITSPAGRPIQTSRDLPSFWAGSWREVAKEMRGRYPRHPWPDDPASATPTL
RTKPRS
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgttctggccgcaggcgatggcccccgtgaccaccgccctcccgatccattctgtcctt
cccgacctcttgtccgccctccgcaatggctcgcgggcgctgcttgtcgcgccgccgggc
gccggcaagaccaccgtcattcctcctgcgctgctcgaccagtcatggtgcagcggccag
gtccttctgctggtcccccgccgcctcgccgcccgcgctgcggccgaattcgttgcccgc
ggcctcggcgaagcgcccgggaccacagtcggttaccagacccgcctcgacagcagggtc
ggcaagtccacccggctgatcgccatgacccacggcgtgttcctgtctcgcttgcaggcc
gatcccgaactcgccggagtgtcggcggtgctgttcgacgaagtccacgaacgcagcctc
gatagcgatctcgcgcttgccctcaccctcgacgcctccgccgcactgcgccccgacctc
cgcctactggcgatgagcgccaccctcgatggcgagcgcttcgccgccctcctaggcgat
ccgccgatgatccgctccgagggccgctcgcacccgctcaccctggtccacctcggccgc
gatgccgccgcgcggatcgagccccaggtcgccgccgcctgccgccgtgcgctggccgac
agtgacgcctcggtcctcgcctttctccccggcgtcgccgagatcgagcgcaccgccgac
gcgctcggcgccctgccccccgaagtgatcctccaccgcctccacggccaggtcgatccc
gccgcccagcgcgccgcgcttgccccgcccgctcccggcacccgcaagctggtcctcgcc
acctcgatcgccgagaccagcgtcacccttgatcacgtcgccgcggtggtcgacagcggc
cttgcccgccgcccgcgctacgaccgcggcgccggcctgacgcgcctcgtcaccgaacgc
gcctcccgcgccgcggtcacccagcgtgccggccgcgccgcccggcagcggccgggcatc
gcctatcgcctatgggaggaggccgccttcaacgccctccccgcccacgacccgccagag
atcctcgaagccgacctgtcgagcctgcttctcacctgccttggctggggcgaagccgat
ccgtcgcgcctgccctttctcgacccgccgcccgctgccgccctcgccgaagcccgccgc
cgcctcgaagcgctcggcgcgatgatccccgatggccgcctcaccgaccacggccgcgcc
atcgcccgggtgccgctcgagccttgcctcgcccacatgctgatcgaagcctctgcccgc
ggcttcggccgggctgctgccgatgccgccgtcctcctcaccgagcgcgggctgggcggc
aacgaccccgacctcgacctgcgccaccgccgctggcgcagcgaccgcggcaagcgcgcc
gaggcggcaagggggctggggaagcgtttcttatcgttcgtcctgagcggagcgccgcag
gcgcgtagtcgaagggccgtaggcgaagggcagcgacaacgtccttcgacttcgctcagg
acgaacgaggatgtgaacgatttgggacccgcaatcgccctcgccttccccgaccgcctc
tcccgccgacgcggccccacgggcgagcattggcagtcggtcggcggtcgcggattccgc
ctcgatcccgcctcctcgctcgcctcggcccagtggctggcggtggccgaggtggccggt
gcagcggccggtgcccggatcctgtcggcggccgcgatcgacgaggccgaggtggtcgcc
ctgttcggcgaccgcatcgagacccgccatgacggcgccttcgatcccgctaccggcggc
gtgaccccctcccgcagccgccggctcggcgcgatccgcctgtcctccgggcccgacccc
actcccgacccccacgccatcgccgccgccctcgtcgagggcgtcgccgagcatggcctc
aacctcctcccatggaatgaggacgcccacgccttgcgcgcccgggccgccttcgccgcc
tcgcgcgacccaaccctccccgacctctcggacgaagcgctcgcaacccgtctcgacgaa
tggctctcaccgcttgcccagggccgccgccgcctgtcggatatcggcggcggagcgctg
gtccaggcgctccacaacctgctcggctgggacggccagcagcggctcgacaagctggtg
cccagccacttccgctcgccggccggctcggcccacccgattgactatgccgcgcccggt
ggcccgacggtggaggtccgcgcccaggcgttgttcgggctcgcgacccatccgatggtc
gccggcggtcaggtcccgctgaccctcgccatcacctcgcccgccggccgcccgatccag
accagccgcgacctgccttccttctgggccgggagctggcgcgaggtcgccaaggagatg
cgcggccgctacccgcgccacccctggcccgacgacccggcgtcggccacgccgaccctg
cgcaccaagccgcgctcttga
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