Sphingomonas glaciei: M1K48_02180
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Entry
M1K48_02180 CDS
T08593
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sglc
Sphingomonas glaciei
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sglc03032
]
M1K48_02180
03400 DNA repair and recombination proteins [BR:
sglc03400
]
M1K48_02180
Enzymes [BR:
sglc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M1K48_02180
DNA replication proteins [BR:
sglc03032
]
Prokaryotic type
DNA Topoisomerases
M1K48_02180
DNA repair and recombination proteins [BR:
sglc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M1K48_02180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
V-ATPase_H_C
Motif
Other DBs
NCBI-ProteinID:
UUR08477
LinkDB
All DBs
Position
complement(486819..487940)
Genome browser
AA seq
373 aa
AA seq
DB search
MEQSAPARLRHCCDDQPGITRKQIKGKWAYFSPDGDRITDRDEIDRLNGIALPPAYTDAW
FCPFPNGHIQATGRDAKGRKQYRYHDAFRGRQDKKKYLGTVEFGSALPKLRRRVEKDLGG
KPTSREAVLAAVVRLLDTEHIRIGNESYARDNKSFGATTLRSRHLTRSGNKLLVKFKGKH
GITRELAITDAKLKRVVSKITELPGQNLFQYVTDDGETCAIASSDVNDYIREATGGDFTA
KNFRTWSASVIAFDQMLSAQEEEVRKISLKTVLEPVAEALGNTPAISRKSYVHPKLIEAT
RDNPKRPLGPIERPRARKYLASEEVGLIAWLMKGKKKSGSAKEAQANVDAAVKAADVSMA
KVDAVAKKVAAAA
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggaacagtccgcccccgcccgcctccgccactgctgcgacgatcagccgggcatcacc
cgcaagcagatcaagggcaagtgggcctatttctcgcccgacggcgaccgcatcaccgac
cgcgacgagatcgaccgcctcaacgggatcgcgcttccccccgcctacaccgacgcctgg
ttctgccccttccccaacggtcacatccaggccaccggccgcgatgccaaggggcgcaag
caatatcgctatcacgacgccttccgtggccgccaggacaagaagaagtatctcggcacg
gtcgagttcggctccgcccttcccaagctccgccgccgcgtcgaaaaagacctcggcggc
aagccgaccagccgcgaggccgtgctcgccgcggtcgtccgcctgctcgacaccgaacac
atccgcatcggcaacgaaagctacgcccgcgacaacaagagcttcggcgccaccaccctg
cgcagccgccacctcacccgctcgggcaacaagctgctggtcaagttcaagggcaagcat
ggcatcacccgcgaactggcgatcaccgatgccaagctcaagcgggtggtgtccaagatc
accgagctgcccggccagaacctattccaatacgtcaccgacgacggcgagacctgcgcc
atcgcctcctcggacgtgaacgattatatccgcgaggcgaccggcggcgacttcaccgcc
aagaacttccgcacctggagcgcgagcgtgatcgcgttcgaccagatgctgtccgcgcag
gaagaggaagtccgcaagatcagcctcaagaccgtgctcgaaccggtcgccgaagcgctc
ggcaacacccctgcgatcagccgcaagtcctacgtccatcccaagctgatcgaggccacc
cgcgacaatcccaagcgcccgctcggccccatcgagcggccccgcgcccgcaagtatctc
gccagcgaggaagtcgggctgatcgcctggctgatgaagggcaagaagaagtcgggcagc
gcgaaggaggcccaggccaatgtcgacgccgcggtcaaggccgccgacgtctcgatggcc
aaggtcgatgccgtggcaaaaaaggtcgcggcagccgcctga
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