Sphingomonas glaciei: M1K48_05255
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Entry
M1K48_05255 CDS
T08593
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sglc
Sphingomonas glaciei
Pathway
sglc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1K48_05255 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sglc03019
]
M1K48_05255 (rnr)
03016 Transfer RNA biogenesis [BR:
sglc03016
]
M1K48_05255 (rnr)
Enzymes [BR:
sglc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M1K48_05255 (rnr)
Messenger RNA biogenesis [BR:
sglc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M1K48_05255 (rnr)
Transfer RNA biogenesis [BR:
sglc03016
]
Prokaryotic type
tRNA degradation factors
M1K48_05255 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
RNase_II_C_S1
LexA_DNA_bind
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
UUR09029
UniProt:
A0ABY5MYE0
LinkDB
All DBs
Position
complement(1091237..1093468)
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AA seq
743 aa
AA seq
DB search
MPRKPAHTGLPTSRQILDFIEKSGQPAGKREIARAFGLHGHDKIALKALLKDMADEGLID
SAPGRAFHKTGGVPRVTVLRIVAIEEQALAVPDNWQGEGPPPKLRVLEKGRRSALALNDR
ILARTEERGSGHVAHLMKKLQRSADLILGVVHEDEAGAKWLKPVDKRERRQLPLSDLGEA
QTGDLVLAEPSGRPPRVSAKVDAVLGDPFAPRSFSLIAIHKHGLPHEFPNETVEEAREVS
SLPLGSDREDLRHLPIVAIDPADARDHDDAIWASPREDGGWDAIVAIADVSFYVRPGSAL
DREARRRGNSVYFPDRVVPMLPHELSSDICSLKEGQDRAALACHLQVGPDGSLEAHRFTR
AVIRVAANIAYEDAQRAIDGEGGVEPELLDTALKPLWDCWAALYAARQKREPLELDLPER
QVVLDEKGRITSVAPRERLDAHKLVEDFMIAANVAAAKALEAKKAPVMYRVHETPGREKL
TALKDYLATFDMEFALGQVIKPATFNRIIERVGDGDALPEITEQILRTQTQARYSPDPLG
HFGLALPSYAHFTSPIRRYADLLVHRALVSHYKLGEGGLPADDAARFTEIGELISMLERR
AMEAERDTIDRYVAAYLADHVGQLLDCRISGVQPFGFFATVDGLGGDGLILAADLGHEYF
RYDEAGRQLVGDETGETYRIGQRLQLRLTEANPVSGALRFELPEGSYGRPAGGPREQRRD
RVFKPAGGRRGRPANIRHQSRKR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcaagcccgcccacaccggccttcccacctccaggcagatcctcgacttcatc
gagaagtcgggccagcctgccggcaagcgcgagatcgcccgcgccttcggcctgcacggt
cacgacaagatcgccttgaaggccctgctcaaggacatggccgacgaggggctgatcgac
agcgctcccggccgcgccttccacaagacgggcggcgtgccccgtgtcaccgtgctccgc
atcgtcgcgatcgaggagcaggcgctcgcggttcccgacaattggcagggggaggggccg
ccgccaaaactccgcgtgctcgagaagggccgccgctcggcactcgcgctcaacgatcgc
attctcgcccgtaccgaggagcgcgggtcgggccatgtcgcccacctaatgaagaagctg
cagcgctcggccgacctcatcctcggcgtcgtccacgaggacgaagcgggcgccaagtgg
ctgaaacccgtcgacaagcgtgaacgccgccagcttcccctgtccgacctcggggaggcg
cagaccggggacctcgtcctggccgaaccctccggccgcccgccgcgcgtgtcggccaag
gtcgacgccgtcctcggcgatcccttcgccccgcgcagcttcagcctgatcgccattcac
aagcacgggcttccgcacgaattccccaacgaaacggtcgaggaagcgcgcgaggtgtcg
agcctgccgctcggctccgaccgcgaggacctgcgccacctgccgatcgtcgccatcgac
cccgccgacgcccgcgaccatgacgacgccatctgggcctcgccccgcgaagacggcggg
tgggatgcgatcgtcgccatcgccgacgtcagcttctacgtccgccccggcagcgcgctc
gaccgcgaagcccgccgccgcggcaacagcgtctacttccccgaccgcgtcgtcccgatg
ctgccgcacgaactgtcgtccgacatctgttcgctgaaggaaggccaggaccgcgccgcg
ctcgcctgccacctccaggtcggccccgacggtagcctcgaggcgcaccgcttcacccgc
gccgtgatccgggtcgccgccaatatcgcctatgaggacgcccagcgcgccatcgatggc
gaaggcggggtggaacccgaattgctcgacaccgcgctgaagccgctgtgggactgctgg
gccgcgctttacgccgcccgccagaagcgcgagccgctcgaactcgacctgcccgaacgc
caggtcgtcctcgacgagaagggtcgaatcacctcggtcgccccgcgcgagcggctcgac
gcgcacaaactggtcgaagatttcatgatcgccgccaacgtcgccgccgccaaggcgctg
gaggcgaagaaggcgccggtcatgtaccgcgtccacgagacgcccggccgtgagaagctg
accgcgctcaaggattatctcgccaccttcgatatggagttcgcgctgggccaggtgatc
aagcccgcgaccttcaaccgcatcatcgagcgggttggggacggggatgcgctgcccgag
atcaccgagcagatcctgcgcacccagacccaggcccgctactcgcccgatccgctcggc
cacttcgggctggcgctgccgtcctacgcccacttcacctcgccgatccgccgctacgcc
gatctcctcgtccaccgcgcgctggtcagtcactacaagctgggcgaaggcggattgccc
gctgacgacgccgcccgcttcaccgagattggcgagctcatctccatgctcgaacgccgc
gcaatggaggccgagcgcgacaccatcgaccgctacgtcgccgcctatctcgccgatcac
gtcggccaattgctcgattgccgcatctcgggcgtccagccgttcggcttcttcgccaca
gttgatggtctcggcggtgacggcctgatccttgccgccgaccttgggcatgaatatttc
cgctacgacgaggccgggcgccagctggtcggtgacgagaccggcgaaacctatcgcatc
ggccagcgactccagctgcgcctgaccgaagccaatccggtcagcggcgcgctccgtttc
gagcttccggagggcagctacggccgtcccgccggaggccccagggaacaacggcgtgac
cgcgtctttaagcctgctggcggtcgccgcggccgaccggcaaacatccgccaccaatcc
cgcaagcgctag
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