KEGG   Sphingomonas glaciei: M1K48_05385
Entry
M1K48_05385       CDS       T08593                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sglc  Sphingomonas glaciei
Pathway
sglc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sglc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M1K48_05385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sglc03019]
    M1K48_05385
Messenger RNA biogenesis [BR:sglc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     M1K48_05385
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 RMMBL Lactamase_B RNase_J_C Anti-Pycsar_Apyc1 RsbRD_N
Other DBs
NCBI-ProteinID: UUR09055
UniProt: A0ABY5MX70
LinkDB
Position
complement(1118593..1120227)
AA seq 544 aa
MTPGNELLFLALGGSGEIGMNVNLYGTEGKWLMVDCGMTFGEADYPGIDLVLPDLEFIEK
RRRDLVGLVLTHGHEDHIGAIPYLAADLQVPLYATPFTAGLIAHKLEEEGLTGQVKLKLI
HPGDVLDLGPFKVTPVPLAHSIPEANGLLIETRHGRIFHTGDWKLDPTPVLGNPTSPEKL
KAIGDLGIDVMVCDSTNAFTEKASGSEAELFDGLRAAVEESTGRVLVTTFASNAARLHTI
GKVAEATGRRVAVAGRSIERYLKVARATGYLTDFPDTIRYDEAMRMPRRELLVVATGGQG
EPRAALGRIAAGQHEIKFGENDTVIFSSRQIPGNENAVGRVMNQLAELGVRTVTERQAHV
HVSGHPGRPELQQMYEWIRPKLLIPVHGERRHMLEQARLGTDSGIPAALVQENGDLIRLA
PGNAKKVGEERVGRLVLDGDVILPADGTTINERRRISQQGVIAVSVVLRSNGSLAADPVV
RAVGVPVEEDREDFIRDAQATAAKAVEPIRDEDRLRENIRLAVRRCATLWTGKKPNVEVL
VTRL
NT seq 1635 nt   +upstreamnt  +downstreamnt
gtgacaccaggaaacgaactgctcttcctcgcgctcggcggctcgggcgagattggcatg
aacgtcaatctctacggcaccgaaggcaagtggctgatggtcgattgcggcatgaccttc
ggtgaggccgactatcccggcatcgacctcgtcctgcccgacctcgaattcatcgaaaag
cgccgcagggacctcgtcgggctcgtcctcacccacggccacgaagaccatatcggcgcg
atcccgtatctcgccgccgacctccaggtgccgctctacgcgacgccgttcaccgcaggg
ctgatcgcccacaagctggaggaggaaggccttaccggccaggtcaagctcaagctcatc
catccgggtgacgtcctcgacctcgggccgttcaaggtcacaccggtgccgctcgcccac
tcgatccccgaggccaacggcctgctgatcgagacgcgccacggccggatcttccacacc
ggcgactggaagctcgatcccaccccggtgctcggcaacccgaccagccccgagaagctg
aaggcgatcggcgaccttggaatcgatgtgatggtctgcgattcgaccaacgcctttacc
gaaaaggcgtcgggctccgaggccgagctgttcgacggactgcgcgcggcggttgaagaa
tcgaccggccgagtgttggtcacgaccttcgcctccaacgctgcgcggctgcacaccatc
ggcaaggtcgccgaagcgaccgggcgccgggtggccgtcgcgggccgctcgatcgagcgc
tacctcaaggtcgcccgcgccaccggctacctcaccgactttcccgacaccattcgttat
gacgaagcgatgcggatgccacgtcgcgagctgttggtggtcgccaccggcgggcagggc
gaaccgcgcgctgcacttgggcggattgcggcagggcagcacgagattaagttcggcgag
aacgacaccgtcatcttctcctcgcgccagatccccggcaacgagaatgccgtcggccgg
gtgatgaaccagctggccgagctcggcgtccgcacggtcacagagcggcaggcgcatgtc
cacgtctcgggccacccgggccggcctgagctccagcagatgtacgagtggatccggccc
aagctgctgatccccgtccatggcgagcgccgccacatgctcgaacaggcccgcctcggc
accgacagtggcatccccgctgccctggtgcaggagaatggcgacctcatccgcctcgcg
cccggcaatgccaagaaggttggcgaggagcgtgtcggccgactggtgctcgacggcgac
gtcatccttccggccgacggcacgacaatcaacgagcgccgccgcatctcccagcagggc
gtgatcgcggtcagcgtggtgctgcgcagcaacggctcgctcgccgccgacccggtagtg
cgggcagtcggcgtgccggtcgaggaggatcgcgaagacttcatccgcgatgcgcaggcc
accgcggcgaaggctgtcgagccgatccgcgacgaggacagattgcgcgagaacatccgg
ctcgcggtccgccgctgcgcgacgctgtggacgggcaagaagcccaacgtggaagtgctg
gtgacccgcctgtga

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