Sphingomonas glaciei: M1K48_05385
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Entry
M1K48_05385 CDS
T08593
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sglc
Sphingomonas glaciei
Pathway
sglc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1K48_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sglc03019
]
M1K48_05385
Messenger RNA biogenesis [BR:
sglc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M1K48_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
RNase_J_C
Anti-Pycsar_Apyc1
RsbRD_N
Motif
Other DBs
NCBI-ProteinID:
UUR09055
UniProt:
A0ABY5MX70
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Position
complement(1118593..1120227)
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AA seq
544 aa
AA seq
DB search
MTPGNELLFLALGGSGEIGMNVNLYGTEGKWLMVDCGMTFGEADYPGIDLVLPDLEFIEK
RRRDLVGLVLTHGHEDHIGAIPYLAADLQVPLYATPFTAGLIAHKLEEEGLTGQVKLKLI
HPGDVLDLGPFKVTPVPLAHSIPEANGLLIETRHGRIFHTGDWKLDPTPVLGNPTSPEKL
KAIGDLGIDVMVCDSTNAFTEKASGSEAELFDGLRAAVEESTGRVLVTTFASNAARLHTI
GKVAEATGRRVAVAGRSIERYLKVARATGYLTDFPDTIRYDEAMRMPRRELLVVATGGQG
EPRAALGRIAAGQHEIKFGENDTVIFSSRQIPGNENAVGRVMNQLAELGVRTVTERQAHV
HVSGHPGRPELQQMYEWIRPKLLIPVHGERRHMLEQARLGTDSGIPAALVQENGDLIRLA
PGNAKKVGEERVGRLVLDGDVILPADGTTINERRRISQQGVIAVSVVLRSNGSLAADPVV
RAVGVPVEEDREDFIRDAQATAAKAVEPIRDEDRLRENIRLAVRRCATLWTGKKPNVEVL
VTRL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
gtgacaccaggaaacgaactgctcttcctcgcgctcggcggctcgggcgagattggcatg
aacgtcaatctctacggcaccgaaggcaagtggctgatggtcgattgcggcatgaccttc
ggtgaggccgactatcccggcatcgacctcgtcctgcccgacctcgaattcatcgaaaag
cgccgcagggacctcgtcgggctcgtcctcacccacggccacgaagaccatatcggcgcg
atcccgtatctcgccgccgacctccaggtgccgctctacgcgacgccgttcaccgcaggg
ctgatcgcccacaagctggaggaggaaggccttaccggccaggtcaagctcaagctcatc
catccgggtgacgtcctcgacctcgggccgttcaaggtcacaccggtgccgctcgcccac
tcgatccccgaggccaacggcctgctgatcgagacgcgccacggccggatcttccacacc
ggcgactggaagctcgatcccaccccggtgctcggcaacccgaccagccccgagaagctg
aaggcgatcggcgaccttggaatcgatgtgatggtctgcgattcgaccaacgcctttacc
gaaaaggcgtcgggctccgaggccgagctgttcgacggactgcgcgcggcggttgaagaa
tcgaccggccgagtgttggtcacgaccttcgcctccaacgctgcgcggctgcacaccatc
ggcaaggtcgccgaagcgaccgggcgccgggtggccgtcgcgggccgctcgatcgagcgc
tacctcaaggtcgcccgcgccaccggctacctcaccgactttcccgacaccattcgttat
gacgaagcgatgcggatgccacgtcgcgagctgttggtggtcgccaccggcgggcagggc
gaaccgcgcgctgcacttgggcggattgcggcagggcagcacgagattaagttcggcgag
aacgacaccgtcatcttctcctcgcgccagatccccggcaacgagaatgccgtcggccgg
gtgatgaaccagctggccgagctcggcgtccgcacggtcacagagcggcaggcgcatgtc
cacgtctcgggccacccgggccggcctgagctccagcagatgtacgagtggatccggccc
aagctgctgatccccgtccatggcgagcgccgccacatgctcgaacaggcccgcctcggc
accgacagtggcatccccgctgccctggtgcaggagaatggcgacctcatccgcctcgcg
cccggcaatgccaagaaggttggcgaggagcgtgtcggccgactggtgctcgacggcgac
gtcatccttccggccgacggcacgacaatcaacgagcgccgccgcatctcccagcagggc
gtgatcgcggtcagcgtggtgctgcgcagcaacggctcgctcgccgccgacccggtagtg
cgggcagtcggcgtgccggtcgaggaggatcgcgaagacttcatccgcgatgcgcaggcc
accgcggcgaaggctgtcgagccgatccgcgacgaggacagattgcgcgagaacatccgg
ctcgcggtccgccgctgcgcgacgctgtggacgggcaagaagcccaacgtggaagtgctg
gtgacccgcctgtga
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