Sphingomonas glaciei: M1K48_10005
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Entry
M1K48_10005 CDS
T08593
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sglc
Sphingomonas glaciei
Pathway
sglc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1K48_10005 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sglc03019
]
M1K48_10005 (recQ)
03400 DNA repair and recombination proteins [BR:
sglc03400
]
M1K48_10005 (recQ)
Enzymes [BR:
sglc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M1K48_10005 (recQ)
Messenger RNA biogenesis [BR:
sglc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M1K48_10005 (recQ)
DNA repair and recombination proteins [BR:
sglc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M1K48_10005 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UUR07274
LinkDB
All DBs
Position
complement(2054990..2056747)
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AA seq
585 aa
AA seq
DB search
MTDPHQLLKQVFGFDHFRGVQEQVVGRVLDGRHTLAIMPTGAGKSLCYQLPSLALEGTAL
VISPLIALMHDQIRSAEALGIKAAALTSADDREAVVRRLLGGELDLLYVAPERANGEGFR
RLIDRVPLSMIAIDEAHCVSEWGHDFRPDYRLLRGLLDDHAELPRLALTATADPRTRADI
LVQLGIPEDGLIVSGFDRPNIRYHIRDRDSGGRQILALLAERPGPAIVYAPSRRETESLA
AQIAASGRPALPYHAGLDASVRAANQAAFVASEEMVMAATIAFGMGIDKPDVRTVIHAGT
PKSIEAYYQETGRAGRDGEPAEAHLLWAAKDFALARQRIEEVPAERQGEERNRLASLAAF
VESTACRRAILLRHFGEDPPEQCGNCDNCLNPPATVEVTEVARKLLSAAFRTEMRFGVGH
LVDVLAGKETDKVFSNNHHQLSVFGICTADELAMVQPVARALIARDALRADAYGGLSFGP
GARGILKGGEEVRIALPPPKKPRRRRGEVADGPADPLFDALREERRRLAKESAVPPYVVF
HDSTLREIAAARPGSLAELGRVQGVGAAKLERYGEAMLGVVRSHG
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacccgcatcagcttttgaaacaagtatttggcttcgaccacttccgcggggtg
caggagcaggtggtcggccgcgtgctggacggacgccatacgctggcgatcatgccgacc
ggtgcgggcaagtcgctctgctaccagctgccctcgctggcgctggaggggacggcgctg
gtgatcagcccgctgatcgcgctgatgcacgaccagatccgctcggccgaggcgctgggg
atcaaggcggcggcgctgaccagtgccgacgaccgcgaggcggtggtgcggcggttgctc
ggcggcgagctcgacctcctctacgtcgcgcccgagcgggccaatggcgagggcttccgg
cggctgatcgaccgggtgccgctgtcgatgatcgcgatcgacgaggcgcattgcgtcagc
gagtgggggcatgacttccgccccgattatcgcctgctgcgcgggctgctcgacgatcat
gccgaactgccgcggctggcgctgaccgccaccgccgatccgcgcacccgcgccgacata
ttggtccagctcggcatccccgaggacgggctgatcgtgtccggcttcgaccggcccaac
attcgctatcacatccgcgaccgtgacagcggtgggcggcagatactggcgctgctggcc
gagcggccgggtccggccatcgtctacgccccgagccggcgcgaaactgagagcctggct
gcgcagatcgccgccagcgggcgcccggcgctcccctatcatgccgggctcgatgcgtcg
gtgcgcgccgccaaccaggccgcgttcgtcgcatcggaagaaatggtgatggcggcgacg
atcgcgttcgggatggggatcgacaagcccgacgtcaggacggtgatccacgccggcacg
cccaagtcgatcgaagcctattatcaggaaaccggccgcgccgggcgcgacggggagccg
gccgaggcgcatctgttgtgggcggccaaggactttgcgctcgcccggcagcggatcgag
gaagtgccagccgagcgccaaggcgaggagcgcaatcgactggccagcctggccgcgttc
gtggagtccaccgcctgccgccgtgccatcctgctgcgccatttcggcgaggacccgccc
gagcagtgcggcaattgcgacaattgcctcaatccgccggcgacggtggaggtgaccgaa
gtcgcccgcaaattgctgtcggccgccttccgaaccgagatgcggttcggggtcgggcat
ctggtcgacgtgctagcgggcaaagaaaccgacaaggtgttctccaataaccatcaccag
ttgagcgtgttcggcatttgcaccgccgacgaattggcgatggtccagccggttgcccgc
gccctgatcgctcgcgatgcgctgcgggccgacgcttatggcggcctcagcttcgggccg
ggcgcgcgcgggatcctcaaaggtggcgaagaagtgcgaatcgcgctgccgccgcccaag
aagccgcgccgccgccggggcgaggtcgccgacggcccggcagatcccctgttcgatgcg
ctgcgcgaggagcggcgccggctggccaaggaaagcgcagtgccgccctatgtcgtcttc
cacgattcgaccctgcgcgagattgcggcggcgcgaccgggatcgctggccgagctcggc
cgcgtgcagggcgtcggcgcggccaagctggaacgctatggcgaggcaatgctgggcgtg
gtgcgcagtcacggctaa
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