Sphingomonas glaciei: M1K48_10130
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Entry
M1K48_10130 CDS
T08593
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sglc
Sphingomonas glaciei
Pathway
sglc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1K48_10130 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sglc03021
]
M1K48_10130 (rho)
03019 Messenger RNA biogenesis [BR:
sglc03019
]
M1K48_10130 (rho)
Transcription machinery [BR:
sglc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M1K48_10130 (rho)
Messenger RNA biogenesis [BR:
sglc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M1K48_10130 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
NACHT
AAA
Fungal_virus_P2_C
OB_RNB
AAA_14
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
UUR07298
UniProt:
A0ABY5MT12
LinkDB
All DBs
Position
2075887..2077143
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKQKTPAQLVAQAEEMGIEGASTLRKQDLLFSILKVRAESGAEIMGSGTIEVLND
GFGFLRSAEANYLAGPDDIYVTPQIVRRFGLRTGDTVEGEIRAPKDGERYFALNRITSIN
FDEPDALRHRVNFDNLTPLYPDAKLKLDTLDPTIKDKSARVIDIVSPLGKGQRALIVAPP
RTGKTVLLQNIARAITDNNPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSKMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVPQNTLTKMWVLRRILMQMGTVDAMQFLLDKMRDAKSNEDFFASMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaggacctcaagcagaagacccccgcccaactcgtcgcgcaagccgaagag
atgggaatcgagggcgcgtcgacgctgcgcaaacaggacctcctcttttccatcctcaag
gtccgcgccgaaagtggcgccgagatcatggggagcggcaccatcgaagtgctcaacgac
ggcttcggcttcctccgcagcgccgaggcgaattatctcgccggcccggacgacatttac
gtcacgccacagatcgtacgccgtttcggcctgcgcaccggtgacacggtcgaaggtgag
atccgcgcccccaaggatggcgagcgctatttcgcgctgaaccggattacctcgatcaac
ttcgatgagcccgatgcgcttcgtcaccgggtcaatttcgacaatctgactccgctctac
ccggacgcgaagctcaagctcgacacgctcgacccgaccatcaaggacaagtcggcgcgc
gtgatcgacatcgtctcgccgctcggcaagggccagcgcgcgctgatcgttgcgccgccg
cgcaccggcaagaccgtgctgctgcagaacatcgcgcgcgcgatcaccgacaacaatccc
gaagtcttcctgatcgtcctgctgatcgacgagcggcccgaagaagtcaccgacatgcag
cggagcgtgaagggcgaggtcgtctcctcgacctttgacgaacccgcgcagcgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcggctggtcgagcacaagaaggatgtc
gtcatcctcctcgactcgatcacccgcctaggtcgcgcctacaacaccgtcgtgccgagc
tcgggcaaggtgctgaccggcggtgtcgatgccaatgccctgcagcgcccgaagcgcttc
ttcggcgcggcgcgtaacatcgaggaaggcggctcgctctcgatcatcgccactgcgctg
atcgataccggctccaagatggacgaggtcatcttcgaagagttcaagggcaccggtaac
agcgaaatcgtgctcgaccgcaaggtcgccgacaagcgcatcttcccggcgctggatgtc
ggcaagagcggcacccgcaaggaagagctgctggtcccgcagaacaccctcaccaagatg
tgggtgctgcgccggatcctgatgcagatgggcacggtcgacgcgatgcagttcctgctc
gacaagatgcgtgacgccaagtcgaacgaggacttcttcgcctcgatgaaccagtaa
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