Sphingomonas glaciei: M1K48_12660
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Entry
M1K48_12660 CDS
T08593
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sglc
Sphingomonas glaciei
Pathway
sglc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1K48_12660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sglc03019
]
M1K48_12660
03009 Ribosome biogenesis [BR:
sglc03009
]
M1K48_12660
Enzymes [BR:
sglc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M1K48_12660
Messenger RNA biogenesis [BR:
sglc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M1K48_12660
Ribosome biogenesis [BR:
sglc03009
]
Prokaryotic type
rRNA processing factors
M1K48_12660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UUR07766
LinkDB
All DBs
Position
complement(2576281..2578941)
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AA seq
886 aa
AA seq
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MTTRMLIDARHPEETRVAVVQGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKSDREALLREEAEHAAEEERLRSEAEDHDEEDGPLDPH
HEDDGHDDRPEEPEGELEGEEADSQGDPEDGERAPRGRRSRKDEAADEVRRKRLNLRRRY
KIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNGSD
RKRLKSIIADLKLPGTMGLIVRTAGLERTKVEIKRDFDYLARLWDEVRENTLGSSAPALI
YRDSDLVKRAIRDLYHRDIDDVLVEGEDGYRAARGYMKLLMPSHVKKVQPHSEATPLFQR
YGVEDQLAAMYQPLVQLKSGGYIVINPTEALVSIDINSGRSTREHNIEQTAFATNMEATH
EIARQLRLRDMAGLVVIDFIDMEQNSHVRKVEKAMKEALRNDRARIQVGRISSFGLMEMS
RQRLRTGVLEASTKACQHCEGTGLMRTASSSGLSALRMIEDEAARGRGDRVCLRAGAEAA
IYVLNKKRAELADIEARYGVSVEVLVDPSLEGARMAVESSGGRPVVPVRQLAPPPPIDDD
EPEVDEEEFAEEFVEDESEEREERGEREDGEGQDGRRRRRRRRGGRNRRRDGEPGEGETE
GERGEGSEEREQDEDEQQPVEADGAEAPAPDDEAGSEDERRKRRGRRGGRRRGGRGRKGE
EGSREDGSREDGGRDGGDEELAPEPGEAPMVEPVPSQDPAPVEVEAQPEPQPELELVADE
KPKARRRPRARKADAVAAEQDAPAPALEAIVSEEAAPADEKPKPKRRSRAKKVEAPVEAA
PEPEREPELKVVSAEAEAPAAAPAEQANDDGSSQPTRKGWWSRTFG
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgcatgctgatcgacgcgcgccacccggaagagacccgggtcgccgtcgtc
caggggaaccggatcgaggagtttgacttcgaatccgccgagcacaagcagcttaagggc
aatatctaccttgccaaggttacccgcgtagaaccctcgcttcaggcggcgtttgtcgat
tacggcggaaatcgccacggcttcctcgccttcagcgaaatccaccccgattattaccag
atccccaagtcggaccgcgaagccctgctccgcgaggaagccgaacatgcggccgaggaa
gagcgcctgcgctccgaggccgaggatcatgacgaggaagacggcccgctcgatccgcac
cacgaggatgacggtcacgacgaccgccccgaggagccggaaggcgaactggagggcgag
gaagccgacagccagggcgaccccgaggatggcgagcgcgccccccgcggccgtcgcagc
cgcaaggacgaagccgcggacgaggtccgtcgcaagcgcctgaacctgcgccgccgctac
aagatccaggacgtgatccagcgccgccaggtgctgctggtccaggtcgtcaaggaagag
cgcggcaacaagggcgcggcgctgaccacctacttgagcctcgccggccgttactgcgtg
ctgatgcccaacacgtcgcatggcggcggcatcagccggaagatttcgaacggctcggac
cgcaagcgtctgaagtcgatcatcgccgacctgaagctccccggcactatgggcctgatc
gtccgcaccgcgggccttgagcggaccaaggtcgagatcaagcgcgacttcgattatctt
gcccggctgtgggacgaagtgcgtgagaacacgctcggctcctcggcgcccgcgctgatc
taccgtgacagcgacctggtgaagcgcgcgatccgcgacctttatcatcgcgacatcgac
gacgtgctggtcgagggcgaggacggctatcgcgccgcccgcggctacatgaagctgctg
atgccgagccacgtgaaaaaggttcagccccacagcgaggcgaccccgctgttccagcgc
tacggcgtcgaggaccagctggcggcgatgtaccagccgctcgtccagctgaagagcggc
ggctatatcgtgatcaacccgaccgaggccctggtctcgatcgacatcaactcgggccgc
tcgacccgcgagcacaatatcgagcagaccgccttcgccaccaacatggaggcgacccac
gaaatcgcccgccagctgcggctgcgcgacatggccggcctcgtcgtcatcgacttcatc
gacatggaacagaacagccatgtccgtaaggtcgagaaggcgatgaaggaggcgctgcgg
aacgatcgcgcccgaatccaggtcggtcgcatctccagcttcggcctgatggaaatgagc
cgccagcgcctgcgcaccggcgtgctcgaagcctcgaccaaggcctgccagcattgcgaa
ggcaccgggctgatgcggaccgcatcctcgtcaggcctgtcggcgctgcggatgatcgag
gacgaagcggcccgcggccgcggcgaccgggtctgcctgcgcgccggcgccgaagcggca
atctatgtcctgaacaagaagcgcgccgaactggccgacatcgaggcgcgttacggcgtc
tcagtcgaagtgctggtcgaccccagtctcgaaggcgcgcggatggcggtggaaagctcg
ggcggacgcccggtcgttcccgtccgccagctcgccccgcctccgccgatcgacgacgac
gagccggaagtggacgaggaagagttcgccgaggaattcgtcgaggacgagagcgaggag
cgcgaagagcgcggcgagcgcgaggatggtgagggccaggacggccgtcgccgccgtcgc
cgccgccgcggtggccgcaatcgtcgccgtgacggtgagcccggcgagggcgaaaccgag
ggcgagcgcggcgaaggctccgaggagcgtgagcaggacgaggacgagcagcagcccgtc
gaggccgatggcgctgaggctcccgctcccgacgacgaagccggcagcgaggacgagcgc
cgcaagcgccgtggtcgccgcggtggccgccgcaggggtggccgtggccgcaagggcgaa
gagggcagccgcgaggatggtagccgtgaggacggcggtcgtgatggaggcgacgaggaa
ctcgcccccgagcccggcgaagccccgatggtcgagccggtcccaagccaggaccccgcc
ccggtcgaggtcgaggctcagcccgagccgcagccggaactcgagctggtcgccgacgag
aagcccaaggcgcgtcgccgtccgcgggcccgcaaggccgatgcggtcgctgccgagcag
gacgctcccgctcccgcgctcgaggcgatcgtctccgaggaagccgcgcctgcggacgag
aagcccaagcccaagcgccgctcgcgcgccaagaaggtcgaagcgccggtcgaagccgcg
cccgagcccgagcgcgagcccgagcttaaggtcgtgagcgccgaggccgaagccccggcc
gccgctcctgccgagcaggccaatgacgatggttcgtcacagccgacccgcaagggctgg
tggtcgcgcaccttcggctaa
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