Sphingomonas glaciei: M1K48_14250
Help
Entry
M1K48_14250 CDS
T08593
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sglc
Sphingomonas glaciei
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sglc03032
]
M1K48_14250 (topA)
03400 DNA repair and recombination proteins [BR:
sglc03400
]
M1K48_14250 (topA)
Enzymes [BR:
sglc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M1K48_14250 (topA)
DNA replication proteins [BR:
sglc03032
]
Prokaryotic type
DNA Topoisomerases
M1K48_14250 (topA)
DNA repair and recombination proteins [BR:
sglc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M1K48_14250 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
MarR_2
DUF6532
Toprim_4
HTH_Crp_2
DUF7343
Motif
Other DBs
NCBI-ProteinID:
UUR08063
LinkDB
All DBs
Position
2867404..2869884
Genome browser
AA seq
826 aa
AA seq
DB search
MKLVVVESPAKAKTIEKYLGPGHKVLASYGHVRDLPPKDGSVNPDEDFAMDWEVYGDKAK
QVKAIADAAKASDTLILATDPDREGEAISWHVRELLAKKKALPKDVRRVTFNAITKSAVL
EAMAAPRELDHDLIDAYRARRALDYLVGFTLSPILWRKLPGAKSAGRVQSVALRLIVDRE
AEIERFRAQEYWTVSARFAATGQEFTARLVELDGKKIDKLTLGDKGSATEAKKAVEAGHF
AVASVETKPFTRNPPPPFTTSTLQQEAARKLGFSASHTMRVAQQLYEDGLITYMRTDGVQ
MAGEAISAARKAVADRFGSQHLPDKPRQYTSKAKNAQEAHEAIRPTDFAMEKAASGDHGR
LYELVLNRALASQMAAARLERTVVELASDRAKLRATGQVTLFPGFLALYEEGRDEKADEE
DGAKMPHLAKGDRPDKLGVDAVQSFTQPPPRFSEASLVKRLEELGIGRPSTYAATLQTLK
DREYVRLEKNRFIPEESGRLVTAFLERFFEKYVSYDYTAELEDELDDVSGGRMAWLKLLE
EFWRDFKPKAGEVMEQKPSEVTAALDEFLSPWLFPDKGDGSDPRLCPACGNGRLALRGGK
FGAFVACSNYPECKFTRKFGQGGDAAATSSEPADLGEGIMLKSGRFGPYVEQGEKRASIP
KDVQIDLEWAQKLLSLPREIGSHPETGELITASIGRYGPYLQHQGKYARLTSTAEVFETG
MNAAVAKLADAASGAGKGRGAAREPLAVLGAHPESAKELKVMEGRFGPYVTDGTTHATLP
KSADPKAVTLDEAVALIDAKAAKGPVKGKKAPAKKKAAPKKAAAKK
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcttgtcgttgttgaatcgccggccaaggccaagaccatcgagaaatatctcggc
ccgggccacaaggtgctggcgagctacggccacgtccgcgacctgccgcccaaggacggg
tcggtgaatccggacgaggacttcgcgatggactgggaggtctatggcgacaaggccaag
caggtgaaggcgatcgccgatgccgccaaggcctccgacacgctgatcctcgccaccgac
cccgaccgcgagggcgaggcgatcagctggcacgtccgcgaactgctggcgaagaagaaa
gcgctgcccaaggacgtccggcgggtgaccttcaacgccatcaccaagtctgcggtgctg
gaggcgatggcggcgccgcgcgaactcgatcacgacctcatcgacgcgtaccgcgcccgc
cgtgcgctcgactatctggtcggcttcaccctgtcgccgatcctgtggcgcaagctgccg
ggtgccaagagcgcgggccgggtacagtcggtggcgctgcgcctgatcgtcgaccgcgag
gcagagatcgagcgcttccgggcgcaggaatattggaccgtgtcggcgcgctttgccgcg
acgggccaagagttcaccgcccggctggtcgagctcgacggcaagaagatcgacaagctg
acgctgggcgacaagggttcggcgaccgaggcgaagaaagcggtcgaggcggggcacttc
gcggtggcgagcgtcgagaccaaaccgttcacccgcaacccgccgccgcccttcaccacc
tcgaccctgcagcaggaagcggcgcgcaagctcggcttttcggcaagtcacacgatgcgg
gtcgcgcagcagctgtatgaggacgggctgatcacctacatgcggaccgacggcgtgcag
atggccggtgaggcgatcagtgccgcgcgcaaggccgtcgccgatcgcttcggatcgcag
cacctgcccgacaagccgcggcagtacacttccaaggctaagaatgctcaggaagcccat
gaggcgatccggccgaccgacttcgccatggagaaggcggcaagcggcgatcatgggcga
ttgtacgagctggtcctgaaccgcgcgctggcgagccagatggcggcggcccggctggag
cggacggtggttgagctggcaagcgatcgggcaaagctgcgcgcgactgggcaggtgacg
ctgttcccgggcttccttgcgctgtacgaggaggggcgcgacgaaaaggccgacgaggaa
gacggcgcaaagatgccgcacctcgccaagggcgatcggcccgacaagctgggcgtcgat
gcggtgcagagcttcacccagccgccgccgcgcttttcggaagcgagcctggtcaagcga
ctggaggagctcggcatcgggcggccgtcgacctacgcggcgacgctgcagacgctgaag
gaccgcgaatatgtgcggctggaaaagaaccgcttcatccccgaggagagcgggcggctg
gtgacggcgttcctggagcgcttcttcgagaagtacgtcagctacgattacaccgccgag
ctggaagacgagctggacgacgtctccggcgggcggatggcatggctgaagctgctcgag
gagttctggcgcgacttcaagcccaaggcgggcgaagtgatggaacagaagccgtcggaa
gtgacggcggcactggacgagttcctgtcgccctggctgttccccgacaagggcgatggc
agcgatccgcggctgtgcccggcgtgcggcaacgggcggctggcgctgcgcgggggcaag
ttcggagcgttcgtggcttgctcgaactaccccgagtgcaagttcacgcggaagttcggg
cagggcggcgatgcggcggcgaccagcagcgagccggcggacctgggcgaaggcatcatg
ctcaagagcgggcggttcgggccctatgtcgagcagggcgagaagcgggcgtcgattcct
aaggacgtgcagatcgacctcgagtgggcacagaagctgctgagcctaccacgtgagatc
gggtcgcacccggagacgggcgagctgatcaccgcatcgatcgggcgctacgggccttac
ctgcagcaccaggggaagtacgctcgtcttaccagcaccgccgaggtgttcgagaccggc
atgaacgccgcggtggccaagctggcggatgcggcgagcggggccggcaagggccgcggg
gcagcgcgggagccgttggcggtgctgggggctcatcccgagagcgccaaggagctgaag
gtgatggaggggcggtttggcccttacgtcaccgacgggacgacccatgcgaccttgccc
aagtcggccgatcccaaggcggtgacgctggacgaggcggtggcgctgatcgatgccaag
gcggccaagggcccggtcaagggtaagaaggcgccggcgaaaaagaaggcggcgccgaag
aaggcggctgcgaagaagtag
DBGET
integrated database retrieval system
