KEGG   Streptomyces glycanivorans: P8A20_09400
Entry
P8A20_09400       CDS       T10510                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sgly  Streptomyces glycanivorans
Pathway
sgly03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sgly00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P8A20_09400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgly03019]
    P8A20_09400
Messenger RNA biogenesis [BR:sgly03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     P8A20_09400
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: WLQ63794
UniProt: A0ABY9JBK8
LinkDB
Position
complement(2246698..2248383)
AA seq 561 aa
MSHPHPELGTPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDVEGIVLTHGHEDHIGAVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVTEGQRERIGIFDCEFVAVNHSIPDALAVAIRTPAGMAVVTGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLVDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGGPHIQARGSGIDDGAFTAVVPKVEDALNKSAQDGVMEPHQLQQLVRRTV
GKWVSDTYRRRPMILPVVVEV
NT seq 1686 nt   +upstreamnt  +downstreamnt
ttgagtcatccacatcctgaactcggtaccccgccgaagctcccgaagggcggtctgcgg
gtcacgccgctgggcggcctcggcgagatcggccgcaacatgacggtcttcgagtacggc
ggccgcctgctcatcgtcgactgcggtgtgctcttccccgaggaggagcagccgggcatc
gacctgatcctgccggacttcaccacgatccgggaccgcctggacgacgtcgagggcatc
gtcctcacgcacggccacgaggaccacatcggtgccgtcccgtatctgctccggctgaag
ccggacatccccctcatcggctccaagctgaccctcgcactcatcgaggccaagctccag
gagcaccggatccgtccctacaccctcgaggtgaccgagggacagcgtgagcgcatcggg
atcttcgactgcgagttcgtcgcggtcaaccactccatcccggacgccctcgcggtcgcc
atccgcacccctgcgggcatggctgtcgtgaccggtgacttcaagatggaccagctcccg
ctggacggccgtctcaccgacctgcacgcgttcgcccggctgagcgaggagggcatcgac
ctccttctctccgactcgacgaacgccgaggtccccggattcgttccgccggagcgggac
atctccaacgtcctgcgcacggtgttcgccaacgcgcagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatcctggacgccgcccacgagtacggccgc
agggtcgcgttcgtcggacgctccatggtccgcaacatgggtatcgcgcgtgacctgggc
tatctcaaggtgcccgcaggtctggtggtcgacgtcaagaccctcgacgacctgccggac
gacgaggtcgtcctggtctgcacgggttcccagggtgagccgatggcagccctctcccgt
atggccaaccgggaccaccagatccggatcgtcccgggcgacacggtgatcctggcgtcg
tccctgatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgcgaacgtcgtccacaagggcaacgccaaggtccacgtctcgggtcacgcctcggcc
ggcgaactgctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctccgggccaacgccgaactcggtgcgctgaccggcgtgccgaaggac
cacatcgtcatcgccgaggacggcgtcgtcgtcgacctcgtcgacggcaaggcgaagatc
gtcggcaaggtccaggccggctacgtgtacgtcgacggcctctcggtcggcgatgtcacc
gagacctccctcaaggaccgccgcatcctcggcgacgaggggatcatctcggtcttcatc
gtggtggacagctcgtccggcaagatcgtgggcggcccgcacatccaggcccgcggttcc
ggcatcgacgacggtgcgttcaccgccgtggtacccaaggtcgaggacgcgctcaacaag
tccgcccaggacggggtgatggagccgcaccagctccagcagctggtccggcgcacggtg
ggcaagtgggtgtccgacacctaccgccggcgtccgatgatccttccggtcgtcgtcgag
gtctga

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