Streptomyces glycanivorans: P8A20_11520
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Entry
P8A20_11520 CDS
T10510
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgly Streptomyces glycanivorans
Pathway
sgly03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P8A20_11520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgly03400
]
P8A20_11520 (ligD)
Enzymes [BR:
sgly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P8A20_11520 (ligD)
DNA repair and recombination proteins [BR:
sgly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P8A20_11520 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WLQ64181
LinkDB
All DBs
Position
2733256..2734149
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AA seq
297 aa
AA seq
DB search
MTPITEVEGRRLALSNLDKVLYPATGTTKGEVLHYYAATAAEVMLPHLRDRPLSFLRYPD
GPEGLRFFTKNPPPGTPDWVRTAPVPRSDDPGARQVLAQDLPSLMWAANLVVEFHTHQWR
QDSPAVADRMVFDLDPGPPAGVVECCTVALWLRERLARDGLPSYGKTSGSKGLHLLVPLE
PTPSEEVTAYARKLAVEAQGALPELAVHRMTRALRPGKVFVDFSQNAAAKTTAAPYTLRA
KGSPTVSAPVTWEEIEGCGAPDDLVLLAGDMAARLERYGDLLAPLNDPGQAGALPAG
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacggaggtggaggggcggcgcctggcgctcagcaatctcgacaaggtg
ctgtatccggccaccggcacgaccaagggtgaggtgctgcactactacgcggccacggcc
gccgaggtcatgctgccgcacctgcgggaccgccccctgtcgttcctgcggtatccggac
ggcccggaggggctgcgcttcttcaccaagaaccccccgcccggtacacccgactgggtg
cgcaccgctccggtcccccgcagcgacgaccccggcgcacggcaggtcctcgcccaggac
ctgccgtcgctgatgtgggcggcgaacctggtggtggagttccacacccaccagtggcgg
caggactcccccgccgtggccgaccggatggtgttcgacctggaccccggcccgccagcg
ggcgtcgtggagtgctgcacggtcgccctctggctgcgggagaggctggcgcgggacggg
ctgccctcgtacgggaagacgtccggctccaaggggctccatctgctcgtccccctggag
cccaccccctccgaggaggtgaccgcgtacgcgaggaagctcgcggtcgaggcacagggc
gcactgcccgagctggccgtgcaccggatgacgcgcgcgctgcgcccggggaaggtgttc
gtggatttcagccagaacgccgcggccaagaccaccgccgcgccgtacaccctgcgggcg
aagggcagtccgacggtctccgcgcccgtcacctgggaggagatcgaggggtgcggggct
ccggacgatctcgtcctcctcgccggtgacatggccgcccgcctggagcggtacggggat
ctcctcgctccgctgaacgaccccgggcaggcaggggccctccccgcgggctga
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