Streptomyces glycanivorans: P8A20_24175
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Entry
P8A20_24175 CDS
T10510
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgly Streptomyces glycanivorans
Pathway
sgly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P8A20_24175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgly03019
]
P8A20_24175
03009 Ribosome biogenesis [BR:
sgly03009
]
P8A20_24175
Enzymes [BR:
sgly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P8A20_24175
Messenger RNA biogenesis [BR:
sgly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P8A20_24175
Ribosome biogenesis [BR:
sgly03009
]
Prokaryotic type
rRNA processing factors
P8A20_24175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WLQ66478
LinkDB
All DBs
Position
5504337..5508515
Genome browser
AA seq
1392 aa
AA seq
DB search
MHEPNEAGTTGNPANAEDNNAPGDKLPPRRRRRAASRPAGPPGTAAPEDVTPAVPAADVV
TPEPEAEAAPPARPRRRAVRKATAPAGAPQAAEVVEPVAETAPAEQEAEETTEAAEAAPP
ARPRRRAVRKATAPAGAPQAAEVVEPVAETAPAEEEAEETTEAPVAEAPRGRRRATRKAT
SPAGAPRSAETVTQETAVAEPVKAPEAEAEPEVAAEPVAAPRGRQRRRASAPAGAPQGAQ
AAEAPAETVTEPVTEPAVEPAREEEPAREEEPAESAPPARTRRRASRKASAPAGSPQPAE
EAAEVAAEKAESLPAAVAEELATETEQVEEAAPRGRQRRRATAAAGRPEFTGKAEEPARK
GRRAARPAVAVFQAPVFAEPMFQTPETAAAAAAAAGPATAYDESDEAEEQRTADRAPRKA
EQPAEAAPAESESAPQGGSRRRRRRRGEAVETEPAATPVTLPAEQPAVTAEDEQESETDA
EHEGDETDEYGDRPSRRRRRGGRRRRRGEANDMDDAEHQDDSAADHSEDEPQQSQDDDED
DEHESASGSSSSRRRRRRRRRSGDASGEDTATGTDDPERTVVKVREPRKKEAEREPGTGF
DEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQI
GVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFE
ALGMAHGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGIS
RKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEEIQKKAKST
SSSNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTDRLSRW
TSEVDVFATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEET
VTKNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAE
VTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSAGGGGGKRSKKRGRGAG
HEHEHGQEHAHAEQPAEVETEAEVAAEVAAPVALPEPEFVADEELYSSAAEAEAAATRGR
GRRRATRKATAPAGAPARVAETAPAAETAPAAPVAEEKPQPEPVAEAPVEAPAAEAEAAP
PARTRRRATRKATAPAGSPKQADVTPPVQPAEPAAEPVAVEDPVVEAPAAPAPAPSEDTK
ASEAPAADEESAPAAPPRARRRVTRKVTAPAGSPAGTEEAAAVVVADTGSDTPGTAGAEE
AESEAPVKKTAARKTAKKATAKKVAAKKTATKTVAKKTAAKKTTKKAPARKTVAAEQSSP
SAAASARTGESE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagccgaacgaagccggtaccaccggaaaccccgcgaacgcggaggacaacaac
gcccccggggacaagctgccgccgcgccgcaggcgccgcgccgcctcccgccccgcgggc
ccgccgggtacggccgcccccgaggacgtcacccctgccgtaccggccgccgacgtcgta
acacccgagcccgaagccgaggccgcgccgccggcgcgtccgcgtcgtcgtgcggtccgt
aaggcgaccgctccggcgggtgcgccgcaggccgccgaggtcgtggagccggtcgccgag
accgctccggccgagcaggaggccgaggagaccaccgaggcggccgaggccgcgccgccg
gcgcgtccgcgtcgtcgtgcggtccgtaaggcgaccgctccggcgggtgcgccgcaggcc
gccgaggtcgtggagccggtcgccgagaccgctccggccgaggaagaggccgaggagacc
accgaggcccccgtcgcggaggccccccgcggccgtcgccgcgccacacgtaaggccacc
tctcccgcgggcgcgccccggtccgccgagaccgtcacgcaggaaaccgccgtggccgag
cccgtgaaggctcccgaggccgaggccgagcccgaggtcgctgccgagcccgtggccgcc
ccgcgaggccgtcagcgccgccgggcgtcggctccggccggtgcgccgcagggtgcgcag
gccgccgaggccccggccgagaccgtcaccgagccggtgaccgagcccgccgtcgagcct
gcccgcgaggaagagcccgcccgcgaggaggagcccgccgagtccgcgccgccggcgcgt
acccgtcgccgcgcctcccgtaaggcgagcgcgccggccggttccccgcagcccgccgag
gaggccgccgaggtcgccgccgagaaggccgagagtcttcccgccgccgtcgccgaggag
ctggccaccgagaccgagcaggtcgaggaggccgcgccgcgaggccgtcagcgccgccgg
gccaccgccgccgcgggccgtcccgaattcaccggcaaggccgaggagcccgcccgcaag
ggccgtcgcgcggcgcgccccgccgtggccgtgttccaggccccggtcttcgccgagccg
atgttccagaccccggagaccgccgctgccgcggccgccgccgcgggccccgccaccgcg
tacgacgagagcgacgaggccgaggagcagcggaccgccgatcgcgcgccgcgcaaggcc
gagcagcccgccgaggccgcgcccgccgagtccgagtccgcacctcagggtggttcgcgc
cgtcgtcgccgccgtcgtggcgaggccgtcgagaccgagccggccgccaccccggtcacg
cttccggccgagcagcccgccgtcaccgccgaggacgagcaggagtccgagacggacgcc
gagcacgagggcgacgagacggacgagtacggggaccggccctcgcgccgtcgccgtcgt
ggtggccgccgtcgccgtcgcggtgaggccaacgacatggacgacgcggagcaccaggac
gacagcgccgctgaccactccgaggacgagccgcagcagtcgcaggacgacgacgaggac
gacgagcacgagtccgcgtcgggctccagcagcagccgtcgccgccgtcgccgtcgccgt
cgcagcggggacgcctccggtgaggacaccgccacgggcacggacgacccggagcgcacc
gtcgtcaaggtccgtgagccccgcaagaaggaggccgagcgcgagcccggcaccggcttc
gacgaggtccagtccatcaagggctcgacccgtatggaggccaagaagcagcgccgccgc
gaggggcgtgagcagggccgccgtcgcgtcccgatcatcaccgaggccgagttcctggcc
cgccgtgaggccgtcgagcgtgtcatggtcgtccgccagagcggcgagcgcacccagatc
ggcgtcctcgaggacaacgtgctcgtcgagcactacgtcaacaaggagcaggcgaccagc
tacgtcggcaacgtctacctgggcaaggtgcagaacgtactgccttccatggaggccgcg
ttcgtcgacatcggcaagggccgcaacgccgtcctgtacgcgggcgaggtcaacttcgag
gcactcggcatggcccacgggccgcgccgtatcgagaccgcgctgaagtccggccagtcc
gtcctcgtccaggtgacgaaggacccgatcggccacaagggcgcccgcctgaccagccag
gtctcgctgcccggccgttacctggtctacgtgcccgagggctcgatgaccggcatcagc
cgcaagctgcccgacaccgagcgcgcccggctgaagacgatcctcaagaagatcgtcccc
gaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgc
cgtgacgtcgagcggctgcagcagcagtgggaagagatccagaagaaggcgaagagcacc
agcagctccaacgcgccgaccctgctctacggcgagccggacatgaccgtccgggtcgtc
cgggacatcttcaacgaggacttctcgaaggtgatcgtcagcggtgacgacgcctgggag
accatccacggctatgtctcgcacgtggcgccggacctgacggaccgcctctcgcgctgg
acgtccgaggtcgacgtcttcgcgacgtaccgcatcgacgagcagctgatgaaggcgctg
gaccgcaaggtctacctgccgagcggcggctccctggtgatcgacaagaccgaggcgatg
gtggtcgtcgacgtcaacaccggcaagttcaccggccagggcggaaacctcgaggagacc
gtcaccaagaacaacctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgac
ctcggcggcatcgtcgtcgtcgacttcatcgacatggtgctggagtccaaccgggacctg
gtcctgcggcggctcctggagtgcctgggacgcgaccgcacgaagcaccaggtcgccgag
gtcacgtcgctgggcctggtccagatgacccgcaagcgggtgggccagggcctgctggag
tccttctccgagacctgtgtccactgcaacgggcgcggtgtgatcgtccacatggagcag
cccacgtccgcgggcggcggtggcggcaagcggtccaagaagcgcggccgtggcgccggg
cacgagcacgagcacggccaggagcacgcgcacgccgagcagccggccgaggtcgagacc
gaggccgaggtggccgccgaggtcgccgccccggtggccctgcccgagccggagttcgtg
gccgacgaggagctgtacagcagcgcggccgaggccgaggctgccgcgacgcgcggccgt
ggccgccggcgcgcgacccgcaaggcgacggctccggccggcgctcccgcccgtgtcgcc
gagaccgctcctgccgccgagaccgctcccgcggccccggtggccgaggagaagccgcag
cccgaaccggtcgccgaggcaccggtggaggctcccgccgccgaggccgaggcagcgccc
ccggcacgtacgcgtcgcagggcgacccgcaaggcgaccgctccggcgggctcgcccaag
caggccgacgtgacgcctccggtgcagccggccgagcccgcggcggagcccgtcgcggtc
gaggacccggtcgtcgaggcccccgcggccccggctcccgcgccttcggaggacaccaag
gcgtccgaggccccggctgccgacgaggagtccgctcccgccgccccgccgcgtgcccgc
cgccgggtgacccgcaaggtcaccgcaccggccgggtcgcctgccgggaccgaggaggcg
gcggccgtggtcgtcgcggacaccggatccgacacgcccgggaccgccggagccgaggaa
gcggaatcggaagccccggtcaagaagaccgcggcgcggaagaccgcgaagaaggccacg
gccaagaaggtggcggccaagaagaccgccaccaagacggtcgcgaagaagaccgccgcc
aagaagacgacgaagaaggcaccggcgaggaagaccgtcgccgccgagcagtcgtcgccc
tccgcagccgcttccgcgcgtacgggggagagcgagtga
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