Streptomyces aurantiacus: GCM10017557_21610
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Entry
GCM10017557_21610 CDS
T07085
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sgm
Streptomyces aurantiacus
Pathway
sgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10017557_21610 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgm03019
]
GCM10017557_21610 (rnj)
Messenger RNA biogenesis [BR:
sgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM10017557_21610 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BCL27302
UniProt:
A0A7G1NXF2
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Position
complement(2607792..2609477)
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AA seq
561 aa
AA seq
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MSHPHPELRLPPKLPQGGLRVTPLGGLGEIGRNMTVFEYDGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGHRERIGPFECEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFANASKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPE
HEIVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GAKVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLIDGKARISGKVQAGYVYVDGLSVGDVGEPTLKDRKILGDEGIISVFV
VLDTSTGKITGGPHIQARGSGIDDSAFSDVLPRVVEVLERSAQDGVVEPHQMQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactccgtctgccgccgaagcttccccaggggggcctcaga
gtcaccccgctcggtggcctcggcgaaatcggccgaaacatgacggtcttcgaatacgac
ggccgccttctgatcgtcgactgcggcgtgctcttcccggaggaggagcagcctggcatc
gacctgatcctcccggacttcagttcgatcagggatcgcctcgacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggtgtcccctttctcctgcgcgagaag
ccggacatcccgctcatcggttccaagctgaccctcgctctcatcgaggcgaagctccag
gagcaccgcatccgcccgtacacgcttgaggtcaaggaggggcaccgggagcgcatcggt
cccttcgaatgcgagttcgtggcggtcaaccactcgatcccggacgccctcgcggtcgcc
atccgcacccccgcgggcatggtggtgcacaccggcgacttcaagatggaccagctcccg
ctggatggccgcctcacggacctgcacgccttcgcgcggctgagcgaggaaggcatcgac
cttctcctctcggactccacgaacgccgaggtcccgggcttcgtcccgcccgagcgtgac
atctcgaacgtgctgcgtcaggtcttcgcgaatgccagcaagcgcatcatcgtggccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgacgccgcccacgagtacggccga
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcacgggacctcggc
tatctgaaggtcccgccgggcctggtggtggatgtcaagacactggacgacctcccggaa
cacgagatcgtcctcgtctgcaccggctcccagggcgagccgatggcggctctctcacgg
atggccaacagggaccaccagatccgcatcgtccagggcgacaccgtgatcctggcgtcg
tcgctgatcccgggcaacgagaacgcggtctaccgcgtcatcaacggcctgacccgctgg
ggcgccaaggtcgtccacaagggcaacgccaaggtgcacgtctcgggccacgcctccgcg
ggcgagctcttgtacttctacaacatctgcaagccacgcaacctgatgccggtccacggt
gaatggcgccacctgcgcgccaacgccgagctgggcgccctcaccggcgtgccgcacgac
cgcatcgtgatcgccgaggacggcgtggtcgtcgacctcatcgacggcaaggcccggatc
tccggcaaggtccaggcgggatacgtgtacgtcgacggcctctcggtcggcgatgtgggc
gagcccacgctgaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtc
gtgctggacaccagcacgggcaagatcaccggaggtccgcacatccaggcccgcggttcg
ggcatcgacgactccgccttcagcgacgtcctcccgagggtcgtcgaagtcctggagagg
tccgcccaggacggcgtcgtcgaaccccaccagatgcagcagctcatccgccgcacgctg
ggcaaatgggtctccgacacctaccgccgccggccgatgatcctgccggtcgtggtcgag
gtctga
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