Streptomyces aurantiacus: GCM10017557_39860
Help
Entry
GCM10017557_39860 CDS
T07085
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgm
Streptomyces aurantiacus
Brite
KEGG Orthology (KO) [BR:
sgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgm03019
]
GCM10017557_39860
Enzymes [BR:
sgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCM10017557_39860
Messenger RNA biogenesis [BR:
sgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM10017557_39860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
AAA_16
SLFN-g3_helicase
PhoH
AAA_30
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BCL29127
UniProt:
A0A7G1P5N1
LinkDB
All DBs
Position
4607076..4611110
Genome browser
AA seq
1344 aa
AA seq
DB search
MSTHPAPALGDLASRLAELSLRDAHRLGRRLEGARRIRKPEARAAVTAEIETEVARAEVR
MAERRGLVPTVSYPEQLPVSQKKDVIADAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVNPDGTFVKLMTDGILL
AEVQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFSDAPIVEVSGRTYPVEVRYRPLLEEEGDDSDRDQITAICDAVEELQGEGKGDILVFLS
GEREIRDTADALEKKKYRFTEVLPLYARLSHAEQNRVFQSHTGRRIVLATNVAETSLTVP
GIKYVIDPGTARISRYSHRTKVQRLPIEAISQASANQRKGRCGRTSDGICIRLYSEDDFL
ARPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGIQLLQELNALDPT
EKDPRNRLTPTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPAEKQ
TQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGLRMEEPAAGAAGTDAPDQQVHLSLLAGLLSHIGMKDVKESGTGTGKDAG
KDGGREGGRSTTKNEYVGARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIE
PEWIEPLAEHLLKRTYSEPHWEKDQAAVMAYEKVTLYGVPIVAHRKVNYGRIDPEISREL
FIRNALVEGDWRTHHKFFADNRRLLTEVEELEHRARRRDILVDDETLFDFYEERVPEHVV
SGAHFDSWWKHKHKEEPELLDFERSMLIRESAGAVTKDDYPDAWRQGRLKFPVTYQFEPG
ADADGVTVHVPLQVLNQVTDDGFEWQIPGLREQVVTELIRSLPKPIRRNYVPAPDFARRF
LERAVPLQEPLTVTLARDLKRMVGVPLTADDFDWSRLPDHLRITFRIVDERRRKLAEDKD
LEALKLRLRPKARQAISQAAAATAERAGGESLERSGLTDWTIGSLSRVFETRRAGQPVKA
FPALVDDGPAANTVSVRLFDTEAEQQQAMWKGTRRLILRNIPVNPAKFASDKLTNAQKLA
LSANPHGSVQALFDDCATAAADRLIGEFGGPAWDEESYRKLYERVRAEIVDTTVRTVGQV
EQVLAAWQACERRLKGVRSAVLLANLTDVRTQLDALVRPGFVTATGLRRLPDLMRYLVAA
DRRLQQMPTNVQRDTSRMEKVHEMQDEYAWLLEQLPQGRPVPSSVLDIRWMIEELRVSYF
AHALGTAYPVSDKRIVKAIDAAAP
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcaccctgcccccgccctcggcgatctcgcctcccgtctggccgagctgtca
ctgcgcgacgcgcaccggctcgggcgcaggctggagggcgcgcgccggatccgcaaaccc
gaggcccgcgccgccgtcaccgccgagatcgagacggaggtggccagggccgaggtccgc
atggccgagcggcgcggcctcgtgcccaccgtctcgtaccccgagcaactgcccgtcagc
cagaagaaggacgtgatcgcggacgccatccgtgatcaccaggtcgtcatcgtcgcgggc
gagaccggctccggcaagacgacccagatccccaagatctgcctcgaactgggccgtggc
gtccgcggcatgatcgggcacacccagccccgccgtatcgccgcgcgcaccgtcgccgag
cgggtcgccgaggagctggacaccccgctgggcgaggccgtcggctggaaggtccgcttc
accgaccaggtgaacccggacggcaccttcgtcaagctgatgacggacggcatcctgctc
gccgaggtccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcc
cacgagcggtccctgaacatcgacttcctgctcggctatctggcccagctgctgccgaag
cggccggacctcaaggtcgtcatcacctccgcgacgatcgaccccgagcgcttctccaga
catttcagcgatgccccgatcgtcgaggtcagcggacgcacgtaccccgtggaggtgcgc
taccgccccctcctcgaagaggagggcgacgactccgaccgcgaccagatcaccgcgatc
tgcgacgccgtcgaggagctgcagggcgagggcaagggcgacatcctcgtcttcctgtcc
ggcgagcgggagatccgcgacacggccgacgcgctggagaagaagaagtacagattcacc
gaggtactccccctctacgcccggctctcgcacgccgaacagaaccgggtcttccagtcc
cacaccgggcgcaggatcgtgctggccacgaacgtcgcagagacctccctcaccgtcccg
ggcatcaagtacgtgatcgaccctggcaccgcccgcatctcccggtacagccaccgcacg
aaggtccagcggctgcccatcgaggcgatctcgcaggccagcgccaaccagcgcaagggc
cgctgcgggcgaacgagcgacggcatctgcatccgtctctactccgaggacgacttcctc
gcccgcccggagttcacggacgccgagatcctccgtacgaacctggcgtccgtcatcctc
cagatgaccgcggccgggctcggcgagatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgggacggcatccagctcctccaagagctcaacgccctggatcccacg
gagaaggacccccgcaaccgcctcaccccgaccggccgcaagctcgcccagctgcccgtc
gacccgcgcctcgcccgcatggtcctggaggccgacaagaacgggtgcgtacgcgaggtc
atggtgatcgcggcggcactctccatccaggacccgcgcgagcggccggccgagaagcag
acacaggcggaccagcagcacgcccgcttcaaggacgagacgtccgacttcctggcgtac
ctcaacctctggcggtacgtgcgcgagcagcagaaggagcgcggctcgtcgtcgttccgt
cgcatgtgcaagcaggagtatctgaacttcctgcgcatccgcgagtggcaggacatctac
acgcaactgcgcacggtcgccaagcagatgggcctccgcatggaggagcccgcggcgggt
gcggcgggtactgacgcacccgaccagcaggtccatctgtccctcctcgccggcctgctc
tcccacatcggcatgaaggacgtgaaggagtcaggaacagggacagggaaggacgccggg
aaggacggcgggcgcgagggcggcaggagcaccacgaagaacgagtacgtgggcgcccgc
aacgccaagttcgcgatcttccccggctcggcgctcttcaagaagcccccgcgcttcgtc
atgtccgccgagctcgtcgagacgtcccggctgtgggcccgcgtcaacgcgcgcatcgag
cccgagtggatcgaaccgctcgcggagcacctgctgaagcgcacgtacagcgagccgcac
tgggagaaggaccaggcggcggtgatggcgtacgagaaggtcacgctgtacggcgtaccg
atcgtcgcccaccggaaggtcaactacgggcgtatcgacccggagatcagccgcgagctg
ttcatccgcaacgcgctcgtcgagggcgactggcgtacgcaccacaagttcttcgccgac
aaccgccgcctcctcaccgaggtcgaggagctggagcaccgggcgcggcgccgggacatc
ctggtcgacgacgagacgctcttcgacttctacgaggagcgggtgcccgaacacgtcgtg
tccggcgcccacttcgactcctggtggaagcacaagcacaaggaggagcccgaactcctc
gacttcgagcgctcgatgctcatccgggagtcggccggggcggtcaccaaggacgactat
ccggacgcgtggcggcaggggcggctgaagttccccgtcacgtaccagttcgagccgggc
gccgacgcggacggcgtgaccgtccacgttccgctccaggtgctgaaccaggtcacggac
gacggcttcgagtggcagatcccgggcctgcgggagcaggtggtcaccgagctgatccgt
tccctcccgaagccgatccgccgcaactacgtgcccgcgcccgacttcgcgagacggttc
ctggagcgggcggtaccgctccaggaacccttgacggtgacactggcacgcgacctgaaa
cgcatggtcggagtaccgctgacggccgacgacttcgactggtccaggcttcccgaccat
ctgaggatcaccttccggatcgtcgacgagcggcggcgcaagctggccgaggacaaggac
ctggaggccctgaagctgcggctgaggccgaaggcgcgccaggcgatctcgcaggccgcc
gcggcgaccgccgagcgggcgggcggggagtccctggagcgctcggggctgaccgactgg
accatcggctcgctcagccgcgtcttcgagacgcgccgggcgggccagccggtgaaggcg
ttcccggcactggtcgacgacggtcctgcggcgaacaccgtctccgtacgcctcttcgac
accgaggccgagcagcagcaggcgatgtggaagggcacgcggcggctcatcctgcgcaac
atcccggtgaatccggcgaagttcgcgtcggacaagctcacgaacgcgcagaagctggcc
ctgtccgcgaacccgcacggatcggtccaggccctgttcgacgactgcgccacggctgcc
gcggaccggctcatcggcgagttcggcggcccggcctgggacgaggagtcgtaccggaag
ctgtacgagcgggtgcgcgcggagatcgtcgacacgacggtccgcaccgtcggccaggtc
gaacaggtgctggccgcctggcaggcctgtgagcgccgtctgaagggcgtacggagcgct
gtgctcctcgccaacctgacggacgtacgcacgcagctggacgccctcgtgcggccgggc
ttcgtcacggcgacgggtctgcggcggctgccggacctgatgcgctatctggtcgcggcg
gaccgccggctccagcagatgccgacgaacgtccagcgggacacgagccggatggagaag
gtccacgagatgcaggacgagtacgcctggctgctggagcagctgccgcagggccgcccg
gtcccctcgtccgtcctggacatccgctggatgatcgaggagctgcgcgtcagctacttc
gcgcacgcgctgggcacggcgtatcccgtctccgacaagcgcatcgtgaaggcgatcgac
gcggccgcaccgtaa
DBGET
integrated database retrieval system
