Streptomyces aurantiacus: GCM10017557_47380
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Entry
GCM10017557_47380 CDS
T07085
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgm
Streptomyces aurantiacus
Brite
KEGG Orthology (KO) [BR:
sgm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgm03016
]
GCM10017557_47380
Enzymes [BR:
sgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GCM10017557_47380
Transfer RNA biogenesis [BR:
sgm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GCM10017557_47380
Prokaryotic type
tRNA splicing ligases
GCM10017557_47380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCL29879
UniProt:
A0A7G1P3Q3
LinkDB
All DBs
Position
5458641..5459834
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AA seq
397 aa
AA seq
DB search
MSYMEMPGAKVPIRMWADPASVDDGAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKVEEAIPVGRGMHDSPVDPG
RMHGFATGGWDDFWGRFDGVAEAVKFRQGRATKQMGTLGSGNHFVEICLSEDGSVWLMLH
SGSRNIGKELAEHHIGIAQRLSHNQGLIDRDLAVFIADTPQMAAYRNDLFWAQEYAKYNR
SLMMALLKGVIGKEFKKAKPTFEAEISAHHNYVAEERYEGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKAFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPAAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacatggaaatgccgggggcgaaggttccgatccgtatgtgggcggatccggcg
tcggtggacgacggcgcgatgcagcagctgcgcaacgtcgccacgctgccctggatcaag
ggcctggccgtcatgccggacgtgcactacgggaagggcgcgacggtcgggtcggtcatc
gcgatgcagggtgcggtgtgtcccgcggcggtcggggtggacatcggctgcggcatgtcg
gcggtcaagacgtccctgacggccaacgacctgccgggagacctctcccggctccggtcg
aaggtggaagaggcgattccggtgggccggggaatgcatgacagcccggtcgacccggga
cggatgcacgggttcgccaccggagggtgggacgacttctgggggcggttcgacggggtc
gcggaagcggtcaagttccgtcagggacgcgccacgaagcagatgggcacgcttggatcc
ggaaatcactttgtcgagatttgcctgagcgaggacggctcggtctggctcatgctgcat
tccggatcccggaacatcggcaaggaactggccgagcaccacatcggtatcgcccagcgg
ctttcgcacaatcagggcctgatcgatcgtgacctcgccgtcttcatcgcggacactccg
cagatggcggcgtaccgcaacgaccttttctgggcgcaggagtacgcgaaatacaaccgc
tcgctcatgatggcgctgctgaagggagtgatcggcaaggagttcaagaaagcgaagccg
accttcgaggccgagatcagcgcacaccacaactacgtggccgaggagcggtacgagggc
atggacctgctcgtcacccgcaagggcgcgatccgcgcgggctccggcgagtacggcatc
atcccgggctcgatgggcacgggctcgtacatcgtgaagggcctcggcaacgagaaggcc
ttcaactccgcctcgcacggggcgggccggcgaatgagccgcaacgccgccaagcgtcgc
ttctcgacgaaggacctggaggagcagacacggggtgtggagtgccggaaggactccggc
gtcgtggacgagatcccggccgcgtacaagccgatcgagcaggtcatcgaccagcagcgg
gacctggtcgaggtcgtggcgaagctgaagcaggtcgtgtgcgtgaagggttga
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