Saprospira grandis: SGRA_3420
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Entry
SGRA_3420 CDS
T01764
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sgn
Saprospira grandis
Pathway
sgn03030
DNA replication
sgn03430
Mismatch repair
sgn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGRA_3420 (dnaE)
03430 Mismatch repair
SGRA_3420 (dnaE)
03440 Homologous recombination
SGRA_3420 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgn03032
]
SGRA_3420 (dnaE)
03400 DNA repair and recombination proteins [BR:
sgn03400
]
SGRA_3420 (dnaE)
Enzymes [BR:
sgn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SGRA_3420 (dnaE)
DNA replication proteins [BR:
sgn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SGRA_3420 (dnaE)
DNA repair and recombination proteins [BR:
sgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SGRA_3420 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF6282
Motif
Other DBs
NCBI-ProteinID:
AFC26145
UniProt:
H6L1R7
LinkDB
All DBs
Position
complement(3530182..3533712)
Genome browser
AA seq
1176 aa
AA seq
DB search
MEDFVHLHCHTQFSLLDGASNIGVMMDKAAADGMKAVALTDHGNMFGAFKFVAEAEKRNL
KPIVGCEFYLVEDRHRRSFSKAKGERDRRFHQLLLAKNQQGYQNLSKLCSLGFIEGLYSK
FPRIDKELIEKYHEGLIATSCCIGAEIPQAIMHGKVEEAEQKLKWWLDLFGEDFYIEIQR
HRGLENIDGLGISQEDINQQLLKFAKKYDVKVIATNDSHYVEEDDWTAHDMLLCINTGSL
VQDEKRFKFSSSDYYFKSRQQMNNLFLDRPDSIANTMEIYDKIDKLKLARDVLLPAFPLP
QEFKTQDDYLRHLTYEGAKRRYGSITPAIKERLDFELEVIRQSGYPGYFLIVQDFTTVAR
ELKVSVGPGRGSAAGSAVAYCVGITNVDPIKYDLLFERFLNPSRVSMPDIDIDFDDVGRE
KVIQYVIDKYGQNQVAQIITYGSMAARSSLRDVGRVMDVPLPEVDRVAKTFPSHLSATLK
KVLGKDGVDPKLLGKLNSDEKAQAEEFRQLAAGQDTIGEMIRNAKKLEGSIRSTGIHACG
VVITPDDITNYVPVTVAKDSNLLVSQFDNSVAEDAGLLKMDFLGLKTLSIIKDAVAMIKE
NHGVDIEPDELPLDDPKTYELFQRGETVGIFQYESAGMQKHMRALEPTTFADLIAMNALY
RPGPLQYIPEFIDRKHGRKPIVYDLPDMEEYLAETYGITVYQEQVMLLSQKLAGFSKGEA
DTLRKAMGKKKKKLIDQMFPKFEKGGVERGHPKDVLKKIWQDWEAFASYAFNKSHSTCYA
FVAFQTAYLKAHYPAEFMASVLSHNKDNMESVSFFIAECKAQGVDVLGPDVNESKLDFYA
TPKGRIRFGLSALKGVGQGPVEAILEAREEAAFTDLVDMTQRINLRAANRRCFESLVLGG
AMDAFGLPRAAYFAPYDERQSYLEAVIKYGNAFQKQKNDFSQSLFGATAMEESMPPPKVP
EADPWPLLTRLKKEKEVAGFYLSGHPLDDYKLAVQRLCKPINEMDQYKNREMAIGGIVDE
VEHRVSKKGKSFAFVTVEDYTGRYRMGLFGENYLKFRHLLNLDAVIYIKGKYQPRWNNPH
EFELRINEIRLMDAVSEEKIRGVTINLPIQQLNEQLMEQLDYVCSKHPGEQELEVNLLDL
EERLKLTLLSKNRRISADDAFVDALKKLGLEYKLSS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaagattttgtacatctacattgtcatacgcaattttctttgctcgatggggcttcg
aacattggggtgatgatggataaggcggctgcagatgggatgaaagccgtagctttgacc
gaccatggaaatatgtttggggcctttaagtttgtggccgaggccgaaaaacgaaaccta
aaacccattgtcggctgtgaattttatttggtagaagaccggcatcgccgcagtttttct
aaggccaaaggcgagcgagaccgccgttttcatcagttgttattggccaaaaaccagcag
ggctatcaaaacctatccaagctttgttcgctgggctttattgaagggctctactccaaa
ttccctagaattgataaggagctgattgaaaaatatcatgagggcctgattgccactagc
tgctgtattggggccgagattccccaagccattatgcacggcaaagtggaggaggccgag
caaaaactcaagtggtggctcgacctttttggggaggatttctacattgaaatccaaaga
caccgagggctagaaaatattgatggtctgggcattagccaggaagacatcaatcagcag
ctcttgaagtttgccaaaaaatacgatgtaaaagtcattgctaccaacgactctcattat
gtagaagaagacgattggaccgcccacgatatgttgctttgtatcaatacgggctctttg
gtacaggatgaaaaacgctttaagttttccagttctgactactattttaagagtcggcag
cagatgaacaacttgttcttagatcggcccgattcgattgcgaacaccatggaaatctat
gacaaaattgacaagctcaagctggcccgagatgtccttttgccggccttccccctgccc
caagagtttaagacgcaggatgattatctgcggcatttgacctatgagggcgccaagcgt
cgttatggaagcatcacgcctgccattaaggaacgtttggactttgagctggaggtgatt
cggcagtcgggttatcctggctacttcctaattgtgcaagattttaccaccgtagccaga
gaattaaaggtatcggtggggccaggtcggggttctgctgcgggttctgccgtggcctat
tgtgtggggattaccaatgtggaccccattaagtacgacctcctatttgagcgtttcctc
aatccgagtcgggtatctatgcccgatattgatattgactttgatgatgtgggtcgggag
aaagtgattcagtacgtcattgataaatatggccaaaaccaagtggcccaaattattact
tatggctctatggcggcccgctcttctttgcgagatgtgggtcgagtaatggatgtgccc
ctgcccgaggtggatcgagtggccaagaccttcccttctcatctgagcgccaccctcaaa
aaggtattgggcaaagatggggtagatcccaagctattgggcaagctcaatagtgatgaa
aaagcccaggccgaggagttccgccaattggccgcaggccaagacactattggcgagatg
atccgcaatgcaaaaaagctagagggctctatccgaagtacgggcattcacgcctgtggg
gtggtgattacgcccgacgatattaccaactacgtcccggtgaccgtagccaaggactct
aacctcctggtctcgcagtttgacaactccgtggccgaggatgccggcttgctcaagatg
gactttttgggcctcaaaaccctgagcatcatcaaagatgccgtggccatgattaaggaa
aaccatggcgtagacatagagcccgatgaactgcccttggatgaccccaaaacctatgag
ctctttcagcgaggagaaactgtggggattttccagtatgaatccgcgggtatgcaaaag
catatgcgggccttggagcccaccacctttgcggatcttattgccatgaacgccctttat
cgtccggggcccttgcagtatatccccgaatttattgatcggaagcatggccgcaaaccc
attgtttacgatttgcccgatatggaagaatatctggccgaaacctatggaattaccgtc
tatcaggagcaagtgatgttgctttcgcagaaattggctggctttagtaagggcgaagcc
gataccctgcgtaaagcgatgggaaaaaagaagaaaaagctcattgatcagatgtttccc
aagtttgaaaaaggcggagtagaacggggccaccccaaggatgtcctcaaaaagatctgg
caagactgggaggcctttgcctcttatgcctttaataaatcgcattctacctgctatgcc
tttgtggcctttcagacggcctacctcaaagcgcattatcctgcggaatttatggcttcg
gtcctttcccacaacaaggataatatggagagtgtgagtttcttcattgccgaatgtaag
gcgcagggcgtagatgttctggggccagatgtcaatgaaagtaagctcgacttctatgcc
acccccaaggggcgcatccgctttgggctttcggccctaaagggggtgggccaaggcccc
gtagaagctattttggaagccagagaagaagcggctttcacggatctggtcgatatgacc
cagcgcatcaatctgcgggctgccaaccgccgatgctttgaaagtttggtcttgggcggc
gccatggatgcctttggcctgcctcgagccgcttattttgccccctatgatgagcgccaa
agctatttggaggccgtgattaagtatggtaacgcctttcagaagcagaaaaacgacttt
agtcagtcgctttttggcgccaccgccatggaggaaagcatgcccccacccaaggtcccc
gaggccgatccttggcccttgttgacccgcctgaaaaaggagaaagaggtggccggtttc
tatctttcgggccatccgctagatgactacaaactagccgtgcagcgactctgtaagccc
atcaatgagatggaccaatacaaaaaccgagaaatggccattggcggaatcgtagatgag
gtagagcatcgagtctctaaaaaagggaaatcctttgcctttgttaccgtagaggattat
acgggccgctaccgcatgggcctttttggcgaaaactacctgaagttccgccatctgctc
aatctggatgccgtcatttatatcaaagggaaatatcaaccccgctggaataatccgcat
gagtttgagctccgcatcaatgaaatccgcctgatggatgccgtttctgaggagaaaatc
cgtggggtgaccatcaatttgcccatccaacaactcaatgagcaactgatggaacaactg
gattatgtctgtagcaaacaccccggcgaacaagagctggaggtcaatttgctggaccta
gaagaacggctaaaacttacactactgtccaaaaatcgccgcattagtgccgatgacgcc
tttgtggatgctctgaaaaaattggggctagagtataagttgagttcttag
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