Streptococcus gordonii: SGO_2140
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Entry
SGO_2140 CDS
T00594
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgo
Streptococcus gordonii
Pathway
sgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGO_2140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgo03400
]
SGO_2140
Enzymes [BR:
sgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGO_2140
DNA repair and recombination proteins [BR:
sgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SGO_2140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABV09930
UniProt:
A8B005
LinkDB
All DBs
Position
complement(2185774..2189277)
Genome browser
AA seq
1167 aa
AA seq
DB search
MDNKMNLIDLFCQNQQILDWKKNLNQKTRQLLMGLSGSTKALAIASALDEHQKILVMTSG
YSEAEKLSSDLISLLGEEKVYNFLADDAPMAEFIFSSQEKIYARLGALNFLLDDNESGIL
VTNLSASRLFLPNPNELKSSILELKVGQEYSLDSLVNFLIKIGYRKESQVFNQGEFSLRG
DILDIFDKDSISPYRLEFFGDEIDGIRIFDSESQTSIENLNQVLIHPANDILLADEDYLR
AQKKIEEAVKASQDSRLKSYLEEILQDVKKRQLHPDSRKFLSYFYEKEWTILDYLPKHTP
IFFDDFQKIMERNAQFEMEAATILTEGLQSSKAVSNQKYFVNAYPDFRNYKPATFLSNFH
KGLGNLKLDSLYQFNQYPMQEFFSQFPLLKDEIDRYKKAGSTVILQASSLSSLQSLHKTL
QEYDIQAEYINDKEIHKNSVQIIQGNLNQGFNFVDQKLVLITEYEIFQKKVKRRVRRQNV
SNAERLKDYNELEKGDYVVHNIHGIGRYLGIETIEISGIHRDYVTIQYQNADRVSIPVDQ
IQLLSKYVASDGKTPKVNKLNDGRFQKTKQKVQHQVEDIADDLIKLYAERSQLEGFSFSS
DDENQIEFDNDFPYVETEDQLRSIQEIKKDMESKQPMDRLLVGDVGFGKTEVAMRAAFKA
VNDHKQVAILVPTTVLAQQHYTNFKERFNDFAVNVDVLSRFRTKAEQSETLEALKKGQVD
IIIGTHRLLSQDVEFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHM
SMLGIRDLSVIETPPTNRYPVQTYVLESNPTIIRDAILREIDRGGQVYYLYNKVDTIEQK
VAELKELIPEASIGFVHGQMSEIRLENTLIDFINGEYDVLVTTTIIETGVDIPNANTLFI
ENADHMGLSTLYQLRGRVGRSNRIAYAYFMYRPDKTLTEVAEKRLEAIKGFTELGSGFKI
AMRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIAKKQGKEQKRQKSNAEINLQID
AYLPSDYISDERQKIEIYKRIREIDNRVNYEDLQEELIDRFGEYPDVVAYLLEIGLLKSY
LDKSFVSLVERRQQTVVVRFEKMSQQLFLTQDYFEALAATTLKARIGESDKLIEVIFDVR
QKKDYEILENLIQFGQKLVEIKQRKDD
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggataataaaatgaacttgattgatttattttgtcaaaaccagcaaattttagattgg
aaaaaaaatctaaatcaaaagactagacagttactaatggggttgtctggttctactaag
gcacttgcaatagcctccgctcttgatgaacatcaaaaaattctcgttatgacatcaggt
tatagtgaagcagaaaagttatctagtgatttgatttctttgttaggtgaggaaaaagta
tataattttttagctgacgatgcacctatggctgaatttatcttctcgtctcaagaaaaa
atatatgctcggcttggagctttaaattttttattagatgacaatgagtcaggtattcta
gtcacaaatctttcagctagtcgcctttttttgccaaatccaaatgaattaaaatcttct
attctagaactaaaagttggtcaagaatatagccttgatagccttgtaaactttttgatt
aagattggttataggaaagaatcacaagtttttaatcagggtgagttcagtttaagaggt
gatatcctagatatttttgataaagatagtatttctccttaccgtttagaatttttcgga
gatgagattgatggaatacgtatttttgattcagaaagccaaacttctattgaaaattta
aatcaagttttaattcatcctgcaaacgatatattgttagcagatgaggattacttaaga
gctcagaaaaaaatagaagaggcagtaaaagcaagtcaggatagccgtctaaaatcttat
cttgaagagatcttacaagatgttaaaaaacgccaacttcatccagattctcgaaaattc
ttatcctatttttatgaaaaagaatggactattctagattatcttccaaaacatactcct
attttctttgatgattttcaaaaaatcatggagcgaaatgcacaatttgaaatggaagct
gcaactattttgacagaaggtttacaatctagtaaagctgtttcaaatcagaaatatttt
gttaatgcttatccagattttagaaattacaaacctgccacctttctttcaaattttcac
aaaggcttaggtaacttaaaacttgattctctttatcaatttaatcaataccctatgcag
gaattttttagtcaatttcctttattgaaagatgaaattgatcgttataaaaaagcaggt
tctacagtaatcctgcaagcatcttcattatcttctttacaatctttacataaaacttta
caagaatacgacattcaagcagagtatataaatgataaagaaatccataaaaattcagta
caaattatacaaggaaatttaaaccagggatttaattttgttgatcaaaaacttgtatta
attacagaatatgaaattttccaaaagaaagttaaaagacgtgtaaggcgacaaaatgta
tctaatgcagagcgattaaaggattataatgagttagaaaaaggagattatgttgtccat
aacatacatggtattgggcgatatctaggaattgaaaccattgaaatttctggtattcat
cgagattatgtaaccattcaataccaaaatgccgatcgagtatcaattccagttgaccaa
atccaactcttatcaaaatatgtagccagtgatggaaagacaccaaaagtcaataagtta
aatgacggtcgttttcaaaagacaaaacaaaaagttcagcatcaagtggaagatattgca
gatgatttaattaaattgtatgcagagaggagccagctagaaggtttttccttttctagt
gatgacgaaaatcagattgaatttgataatgattttccttatgttgaaacagaggatcaa
ttacgaagtattcaagaaataaaaaaggatatggaaagcaagcagccaatggatcgccta
ttggtaggagatgttggttttggtaaaactgaagtagcaatgcgggctgcttttaaggct
gttaatgatcataagcaggttgcaattttggtgccaacaactgtacttgctcagcaacat
tatacaaattttaaagaacgttttaatgactttgctgttaatgttgatgttctaagtcgc
tttaggacaaaggcagagcagagtgagactttagaagctttgaaaaaaggtcaagtagat
attattattgggactcatagacttttatcgcaggatgttgaattcgcagatttgggtctg
atagttattgatgaggaacagcgttttggagttaagcataaggagaaactaaaagaatta
aaaacaaaagttgatgttttaacgttaacggcaacccctattcctcgtaccttgcatatg
tcaatgttaggtattcgtgatttatcagtcattgaaactcctccgaccaatcgttatcca
gttcaaacttatgttttagaaagtaatccaactatcattcgagatgcaattttaagagaa
atagatcgtggaggacaagtttactatctttacaataaagttgacacaattgagcaaaaa
gtagctgaattaaaagagttaattccagaagcaagcattggttttgttcatggtcaaatg
agtgaaattagattggagaatactctaattgactttataaatggagaatatgatgtcttg
gttacaactaccattattgaaacaggagttgatattccaaatgcaaacactttgtttata
gaaaatgctgatcatatgggtttgtcaaccttgtatcaacttaggggacgagtaggtcgg
agtaatcgtatcgcctatgcttattttatgtaccgtccagataaaactttgactgaggtg
gctgaaaaacgtttagaagcaattaaaggctttacagagctaggttcaggatttaaaatt
gcaatgcgagatttatccattcgaggagcaggaaacattcttggagcttctcaatcagga
tttattgattctgtaggatttgaaatgtattctcagcttttagaagaagcaatcgctaag
aagcaaggtaaggagcaaaaaagacaaaaaagtaatgcagaaattaatctccaaattgat
gcttatttaccaagtgactatatatcagatgaacgtcaaaaaattgaaatttataaacgt
attcgtgaaattgacaaccgtgtaaactatgaagatttacaagaagaattgatagatcgt
tttggagaatatccagatgttgttgcttatttattggaaattggtctgttgaaatcatat
ttggataaatcctttgtttctttagttgaacgcagacagcagactgtagttgttagattt
gaaaagatgtctcagcaactattcttgacccaggattattttgaagctttggctgcaaca
actttaaaagctcgtataggagaaagcgataaactaattgaagttatttttgatgttcgt
cagaaaaaggattacgaaatcttagaaaatttaattcagtttggtcaaaagttggtggag
ataaaacaaagaaaagatgattaa
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integrated database retrieval system
