Streptomyces gobiensis: test1122_01240
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Entry
test1122_01240 CDS
T08145
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
sgob
Streptomyces gobiensis
Brite
KEGG Orthology (KO) [BR:
sgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgob03019
]
test1122_01240
Enzymes [BR:
sgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
test1122_01240
Messenger RNA biogenesis [BR:
sgob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
test1122_01240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UGY90481
LinkDB
All DBs
Position
complement(252068..254872)
Genome browser
AA seq
934 aa
AA seq
DB search
MTEDMSPAERYAAARQRAAEQATALAPFREMYDFELDDYQIEACQALETGKGVLVAAPTG
SGKTIVGEFAVHLALAEGRKCFYTTPIKALSNQKYSDLVRRYGPDKVGLLTGDNSVNSEA
PVIVMTTEVLRNMLYAGSQTLLGLAYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSL
SATVSNAEEFGDWLDTVRGDTEVIVSEHRPVPLWQHVLAGRRMYDLFEEKAAKREVNPDL
VRMARMENGRTTGPPGRRRGGPLREADRERERRQRSRIWTPSRPEVIERLDAEGLLPAIT
FIFSRAGCEAAVQQCLYAGLRLNDAAARAKVRQIAEERTASIPDEDLHVLGYFEWLEGLE
RGIAAHHAGMLPTFKEVVEELFVQGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQH
ADITPGEYTQLTGRAGRRGIDIEGHAVVLWQRGMDPGALAGLAGTRTYPLRSSFKPSYNM
AVNLVEQFGRHRSRELLETSFAQFQADRSVVGISRQVQKNEEGLEGYRTSMTCHLGDFEE
YSRLRRDLKDRETELAKQGAVQRRAQAATALEKLKPGDIIHVPTGKFAGLALVLDPGLPA
GRSPGHRGFDHHDGPRPLVLTAQRQVKRLAGIDFPVPVEPLDRMRIPKSFNPRSPQSRRD
LASTLRTKAGHFEPQRHKKQRAAAADDSEIARLRAALRAHPCHGCDEREDHARWAERYHR
LRRDTRQLERRIEGRTNTIARTFDRVYALLSDLDYLQGDQVTEDGKRLARLYGELDLLAS
ECLREGVWEGLPPAELAACASALVYEARTADDALPPRLPGGRAKGALGEMVRIWGRLDAL
EEEHRINQTEGVGQREPDLGFAWAAYRWAEGHGLDAVLRDVEMPAGDFVRWCKQVIDVLG
QIAAAAPEGSTVVRNARRAVDGMLRGVVAYSSVG
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggacatgtcccctgctgagcgctacgccgccgctcggcaacgcgctgccgag
caggccaccgcgctcgcccctttccgtgagatgtacgacttcgagctggacgactaccag
atcgaggcatgccaggccctggaaaccgggaaaggcgtgctggtggccgcccccaccggc
tctggcaagacgatcgtcggcgagttcgccgtccacctggctctcgccgagggccgtaag
tgcttctacaccacccccatcaaggccctgtccaaccagaagtacagcgacctggtcagg
cggtacggacccgacaaggtcggccttctgaccggtgacaacagcgtcaattccgaggcg
ccggtgatcgtgatgaccaccgaggtcctgcggaacatgctctacgccggttcgcagacc
ctgctcggcctggcctatgtggtgatggacgaggtgcactacctctccgaccgcttccgt
ggcgccgtctgggaggaagtcatcatccacctcccggagtcggtgaccctggtctcgctg
tctgcgacggtctccaacgccgaggagttcggtgactggctggacaccgtgcgtggcgac
accgaggtgatcgtctcggagcaccgtccggtgccgctgtggcagcatgtgctggccggg
cggcggatgtacgacctcttcgaggagaaggccgccaagcgcgaggtcaaccccgacctg
gtgcggatggcccggatggagaacggccgcaccaccggaccgccaggccgccgccgcggt
gggcccttgcgggaggccgaccgggagcgtgagcgccgccagcgcagccggatctggaca
cccagccgccccgaggtcatcgaacggctcgacgccgagggtctgctgcccgcgatcacc
tttatcttcagccgcgcgggatgcgaagccgcggtacagcagtgtctgtacgccgggctg
cggctcaacgacgcggcggcccgcgccaaggtccggcagatcgccgaggagcgcaccgcc
tccatccccgatgaggaccttcatgtgctggggtacttcgagtggctggagggcctggag
cgcggtatcgccgcgcaccacgccggcatgctgccgaccttcaaggaggtcgtcgaggag
ctctttgtccagggcttggtcaaggccgtgttcgccaccgagaccctggcactgggcatc
aatatgcccgcccggtcggtggtgctggagaagctggtcaagtggaacggtgagcagcac
gccgacatcacacctggtgagtacacccagctgacgggccgggccgggcggcgcggtatc
gatatcgagggacacgcggtggtgctgtggcagcgcggcatggacccgggcgcgctcgcg
gggctggcggggacacgcacgtatccgctgcgttcctccttcaagccgtcgtacaacatg
gcggtcaatctggtcgagcagttcggccgccatcgctcccgtgagctgctggagacgtcc
ttcgcccagttccaggccgaccgctcggtcgtgggaatctcccgtcaggtgcagaagaac
gaggaggggctggagggctaccggacctccatgacctgtcatctgggcgacttcgaggag
tactcgcggctgcgccgggacctcaaggaccgggagaccgagctggccaagcagggcgcg
gtgcagcgccgggcgcaggccgccaccgcgctggagaagctcaagcccggcgacatcatc
catgtgcccaccggcaagttcgccggactcgcgctggtgctcgacccggggctgcccgcc
gggcgcagccccggccaccggggctttgaccaccacgacgggccccgcccactggtgctc
accgcacagcggcaggtcaagcggctggcgggcattgacttccccgttccggtcgagccg
ttggaccggatgcggatccccaagtcgttcaatccgcgcagcccgcagtcccgccgcgat
ctggcctccacactgcgcaccaaggcgggccatttcgagccgcagcggcataagaagcag
cgcgcggcggccgccgatgacagcgagatcgcccggctgcgcgccgctctccgggcccat
ccctgccatggctgtgacgagcgggaggaccacgctcgctgggccgagcgataccaccgg
ctccggcgcgatacccggcagctggagcggcgcattgagggacgtacgaacacgatcgcc
cgtaccttcgaccgggtctacgcgctcctgtccgacctcgactatctccagggcgaccag
gtcaccgaggacggcaagcggctcgcccggctctacggtgagctggatctgctggcttcc
gagtgtctgcgcgagggcgtgtgggaggggctgccgcccgccgaactggccgcctgcgcc
tccgcgttggtgtatgaggcgcggacggctgacgacgcgctgccgccaaggctgcccggc
ggccgggccaagggggcgctgggcgagatggtccgtatctggggccgtcttgacgcgctg
gaggaggagcaccgcatcaaccagacggaaggcgtcggccagcgggagcccgatctcgga
ttcgcctgggccgcctaccgctgggccgagggccatggcctggacgcggtgctgcgcgat
gtggagatgcccgccggtgatttcgtccgctggtgcaagcaggtcatcgatgtgctgggg
cagatcgcggccgccgcccccgagggcagcaccgttgtgcgcaatgcccgccgggcggtc
gacggcatgctgcgcggcgttgtcgcctactcctcggtgggctga
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