Streptomyces gobiensis: test1122_24640
Help
Entry
test1122_24640 CDS
T08145
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sgob
Streptomyces gobiensis
Pathway
sgob03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sgob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
test1122_24640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgob03400
]
test1122_24640
Enzymes [BR:
sgob01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
test1122_24640
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
test1122_24640
DNA repair and recombination proteins [BR:
sgob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
test1122_24640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
zf-C2HC_3
Ribosomal_S13
Zn_ribbon_19
Zn_ribbon_8
Auto_anti-p27
Zn_ribbon_TFIIB
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
UGY94605
LinkDB
All DBs
Position
complement(5292286..5293074)
Genome browser
AA seq
262 aa
AA seq
DB search
MPELPDVEGFREVLASCAQGERIKRVQVNDTGVLHGVSARRLKRDVEGRRFTEPERHGKW
LLARTDGPTVLLHFGMTGELVCCRETDPPDPHDRVVFTVGHHHLRYRDQRKLRGIWLAED
ADADVARVLDRQGPDAMAVGRAEFAELLSGRRSRIKSALTDQSVLAGLGNLLADEILWRA
RLHPGRRANDLTDDECRRLHTEMRRTLRSAVPTGCVPPRKSWLTGHRDDTDPVCPRCGGA
LHRERMGGRSTVWCPGCQPDGS
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcccgatgtcgagggtttccgggaggtgctcgcctcctgcgcacagggc
gaacggatcaagcgggtgcaggtgaacgacacgggggtcctgcacggagtgagcgcccgg
cggctgaagcgcgatgtggaaggccgccggttcaccgagccggaacggcatggaaagtgg
ctgctcgcccgtaccgacgggcccaccgtgctgctgcacttcggcatgaccggggagctg
gtctgctgccgcgagacggacccgcccgacccgcacgaccgcgtcgtcttcaccgtcggc
catcatcacctgcgctaccgcgatcagcgcaagctgcggggcatctggctcgccgaggac
gccgacgccgatgtcgcgcgggtgctggaccggcagggccctgacgcgatggcggtgggc
cgcgccgagttcgctgagctgctgtccgggcggcgcagccgtatcaagtcggctctgacc
gaccagtccgtgctggccgggctgggcaatctgctcgccgacgagatcctgtggcgcgcc
cggctgcatcccggccgccgggccaatgacctcaccgacgacgagtgccgacggctgcac
accgagatgcgccgcaccctgcgctcggcggtgcccaccggatgcgtccctccgcgcaaa
tcctggctcaccggccaccgggacgacaccgaccccgtctgcccgcgctgcggcggggcg
ctgcaccgtgagcgtatgggcgggcgcagcaccgtctggtgcccggggtgccagccggac
ggttcatga
DBGET
integrated database retrieval system
