Scandinavium goeteborgense: A8O29_003300
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Entry
A8O29_003300 CDS
T06630
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8O29_003300 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgoe03019
]
A8O29_003300 (pnp)
03016 Transfer RNA biogenesis [BR:
sgoe03016
]
A8O29_003300 (pnp)
Enzymes [BR:
sgoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
A8O29_003300 (pnp)
Messenger RNA biogenesis [BR:
sgoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A8O29_003300 (pnp)
Transfer RNA biogenesis [BR:
sgoe03016
]
Prokaryotic type
tRNA degradation factors
A8O29_003300 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QKN80364
LinkDB
All DBs
Position
524636..526771
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKTKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFINEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGLPFNGPIGSARVGYINDQYVLNPTQEELKTSKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQIVIQNINDLVKEAGKARWDWKPEVIDE
ALHARVAGLAQSRLSDAYRITDKQERYTQIDAIKSEVIATLVAEDEALDANELGDILHGI
EKTAVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGDRTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTTDE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGENFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAQYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPEAPAAEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgttcgtaaattccagtatggccagcacacggtcacactggaaacc
ggcatgatggcgcgtcaggcgactgctgccgttatggttagcatggatgacaccgcggta
ttcgttaccgttgtaggtcagaaaaaaaccaagccaggccaggacttcttcccactgact
gttaactatcaggagcgtacttacgctgctggtaaaattcctggtggcttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggttcgc
ccgctgttcccagaaggcttcattaacgaagttcaggttatcgcgaccgttgtatccgta
aacccgcaggttaaccctgatatcgtggcaatgattggtgcttctgcagcactgtccctg
tccggtcttccgttcaacggcccaatcggttctgcgcgcgtgggttacatcaacgaccag
tacgtactgaacccaacccaggaagagctgaaaaccagcaaactggacctggttgttgcc
ggtaccgaagccgctgtactgatggttgaatctgaagctgaactgctgagcgaagaccag
atgctgggcgccgtggtgttcggccacgaacagcagcagatcgttatccagaacatcaac
gacctggtgaaagaagcgggtaaagcacgttgggattggaagccagaagtcatcgacgaa
gcgctgcatgcgcgcgttgccggtctggcacagtctcgtctgagcgatgcataccgtatc
accgacaaacaggaacgttacacccagattgatgctatcaaatctgaagtgatcgcgacc
ctggttgctgaagacgaagcgctggacgctaacgaactgggcgacatcctgcacggtatc
gagaaaactgcagtacgtagccgcgtattggctggcgaaccgcgtatcgatggtcgtgaa
aaagacatgattcgtggtctggacgtgcgcactggcgtactgccacgtactcacggttcc
gcactgttcacccgtggtgaaactcaggcgctggttacagcaactctgggtaccgcacgt
gacgcgcagaacatcgacgaactgatgggcgatcgcactgacagcttcctgttccactac
aacttccctccgtactccgtgggcgaaaccggtatggttggctccccgaagcgtcgtgaa
atcggtcacggccgtctggcgaagcgtggcgtgctggcagtgatgccgaccactgacgaa
ttcccgtataccgttcgtgtggtttctgaaatcaccgaatctaacggttcttcttccatg
gcttccgtgtgtggcgcttccctggcactgatggacgcaggcgtaccgattaaatctgca
gtagcaggtatcgcgatgggtctggttaaagaaggcgagaacttcgtcgttctgtccgac
atcctcggcgacgaagatcacctgggcgatatggacttcaaagttgcgggttcccgcgaa
ggtatctctgctctgcagatggatatcaaaattgaaggtatcaccaaagaaatcatgcag
gttgctctgaatcaggccaaaggtgcgcgtctgcacatcctgggcgtgatggaacaggca
atcaacgcaccgcgtggcgacatctctgaattcgcaccgcgtattcataccatcaagatc
agcccggacaagatcaaagacgttatcggtaaaggcggctctgttatccgtgcgctgact
gaagaaaccggcaccaccatcgaaatcgaagatgacggcaccgtgaaaatcgcagcgacc
gacggtgacaaagcgcagtacgctattcgccgtatcgaagagatcaccgctgaaatcgaa
gtgggccgcatctacaacggtaaagttacccgtatcgtagacttcggtgccttcgtggct
atcggtggcggtaaagaaggcctggtacacatttctcagatcgctgacaagcgcgtagag
aaagtgactgactatctgcagatgggtcaggaagtaccggttaaggttctggaagttgat
cgccagggccgtgtccgtctgagcattaaagaagcgaccgagcagactcagcctgcggcc
gcgccggaagctccggcagcggaacagggcgagtaa
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