Scandinavium goeteborgense: A8O29_003315
Help
Entry
A8O29_003315 CDS
T06630
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8O29_003315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgoe03019
]
A8O29_003315
03009 Ribosome biogenesis [BR:
sgoe03009
]
A8O29_003315
Enzymes [BR:
sgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A8O29_003315
Messenger RNA biogenesis [BR:
sgoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8O29_003315
Ribosome biogenesis [BR:
sgoe03009
]
Prokaryotic type
rRNA helicases
A8O29_003315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
DeaD_C
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
QKN80366
LinkDB
All DBs
Position
527948..529924
Genome browser
AA seq
658 aa
AA seq
DB search
MTDTIETTTIETTFSDLGLNDSIIKALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGS
GKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQR
YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSSLKGLVLDEADEMLRMGFIEDVETIM
AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNE
ALVRFLESEDFDAAIIFVRTKNATLEVAEALEQSGYNSAALNGDMNQSLREQTLDRLKDG
RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER
RLLRNIERTMKLTIPEVELPTRELLSERRLAKFSAKIQQQLESSDLDIYRGLLAKIQPSA
DEALDMETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDERFDRNDRAPRGDRNDRGP
RGDRPERSGEDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFGTHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLVGDAVPHTGGGERRGAPAGGRGGF
GERREGGRSEGARGGEGRRFSGERREGGGAGRFSGERREGGRGPRRDDAPVRRRPTEA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgactgataccatcgagactactactatcgaaactactttttccgatctgggtcttaac
gactccatcattaaagctctgaacgatctgggctacgaaaaaccatctccaatccaggca
gagtgtattccacatctgctgggtggccgcgatgtactgggtatggcccagacgggtagc
ggcaaaactgcagcgttctctttaccgctgctgcacaaccttgatccagagctgaaagca
ccacaaatcctggtgctggcaccgacccgcgaactggcggttcaggttgctgaagccatg
acggatttctctaaacatatgcacggcgtaaacgttgtggccctttacggtggccagcgt
tatgacgtacagctgcgcgccctgcgtcagggaccacaaattgttgtcggtaccccaggt
cgtctgctcgatcacttaaaacgtggcacgctgaacctgtccagcctgaaaggtctggtc
ctggatgaagctgatgaaatgctgcgtatgggcttcatcgaagacgttgaaaccattatg
gctcagatcccagaaggtcatcagaccgctctgttctctgcaaccatgccagaagcgatt
cgtcgtattactcgtcgtttcatgaaagaaccgcaggaagttcgcattcagtctagcgta
acgacccgtcctgacatcagccagagctactggactgtatggggcatgcgtaagaacgaa
gcgctggtgcgtttcctggaatcagaagattttgatgcggcgattatcttcgtacgtacc
aaaaatgcgaccctggaagtggctgaagcgctggaacagagtggctataacagtgccgcg
ctgaacggcgacatgaaccagtccctgcgtgagcagactctggatcgtctgaaagatggt
cgtctggacatcctgattgcgaccgacgttgcggcccgtggcctggacgttgagcgtatt
agcctggttgttaactacgacatcccaatggactccgagtcttacgttcaccgtatcggc
cgtaccggtcgtgcaggtcgtgctggccgtgcgctgctgttcgttgagaaccgcgagcgt
cgtctgctgcgtaacatcgaacgcaccatgaagctgacgattccagaagtagaactgcca
acccgtgaactgctgagtgagcgtcgtctggctaagttctccgctaaaattcagcagcag
ctggaaagcagcgatctggatatctaccgcggtctgctggcaaaaattcagccttctgct
gatgaagcactggatatggaaactctggccgcagcactgctgaaaatggctcagggcgaa
cgtcctctgatcctgccaccagatgcaccgatgcgtcctaagcgtgagttccgcgatcgt
gacgaacgtttcgaccgtaatgaccgtgctccgcgcggcgatcgtaacgaccgtggccca
cgtggtgaccgtccagagcgtagcggtgaagaccgtccgcgtcgcgaacgtcgtgacgtt
ggtgatatgcagctgtaccgcattgaagtgggtcgtgatgacggcgttgaagttcgtcac
attgttggcgctatcgctaacgaaggcgatatcagcagccgttacatcggtaacatcaag
ctgttcggtacccactctactatcgagctgccgaaaggtatgccgggcgaagttctgcag
cactttactcgcacccgcatcctgaacaagccgatgaacatgcagctggtcggtgatgca
gtgccgcacaccggtggcggtgagcgtcgcggtgctcctgctggtggtcgtggcggtttc
ggtgagcgtcgtgaaggcggtcgcagcgaaggtgctcgcggtggcgaaggtcgtcgcttc
agcggtgaacgtcgtgaaggtggtggtgcaggccgtttcagcggtgagcgtcgcgaaggt
ggccgtgggccacgtcgtgatgatgcgccagtgcgtcgtcgtcctaccgaagcataa
DBGET
integrated database retrieval system
