Scandinavium goeteborgense: A8O29_003830
Help
Entry
A8O29_003830 CDS
T06630
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A8O29_003830 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgoe03021
]
A8O29_003830 (rpoD)
Transcription machinery [BR:
sgoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A8O29_003830 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
DUF6118
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
QKN80463
LinkDB
All DBs
Position
complement(638893..640737)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEEMDDDEEKDEEEEDDSSDDDNSIDPELAREKFGELRTQYELARDTIKAKG
RTHAASQEEIKKLSEVFKQFRLVPKQFDYLVNSMRIMMERVRIQERIIMKLCVEQCKMPK
KNFITLFTSNETSETWFNAAVAMNKPWSEKLNDVKDDVQRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaaacttcttgttaccaagggcaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctcctgctggctgaaaactcgaacaacaccgacgaagacgcggaagaa
gctgccgcgcaggtgctgtccagcgtagaatctgaaatcggacgtaccaccgatccggtg
cgcatgtacatgcgtgaaatgggtaccgttgaactgctgacccgcgaaggcgaaatcgac
atcgccaagcgtatcgaagacggcatcaaccaggtacagtgctccgttgcggaatacccg
gaagccatcacttatctgcttgagcagtacgatcgcgttgaagccgaggaagcacgactg
tctgacctgatcaccggcttcgtcgatccaaacgctgaagaagatctggctcctactgcc
actcacgtcggttctgaactctctcaggaagagatggacgacgacgaagagaaagacgaa
gaagaagaagacgattccagcgacgatgacaacagcatcgaccctgaactcgctcgcgaa
aaattcggcgaactgcgcacccagtacgagctggcgcgtgacaccatcaaagccaaggga
cgcacccacgctgcatcccaggaagagatcaagaaactgtctgaagttttcaaacagttc
cgcctggtgccaaaacagttcgattatctggtcaacagcatgcgtatcatgatggaacgc
gttcgtattcaagaacgtatcatcatgaagctgtgcgttgaacagtgcaaaatgccgaag
aaaaacttcattactctcttcaccagcaacgaaaccagcgaaacctggttcaacgcagca
gtagcaatgaacaagccgtggtctgaaaaactgaacgacgtcaaagacgacgtacagcgc
ggcctgcagaaactgcaacagattgaagaagaaaccggcctgaccatcgagcaggttaaa
gacatcaaccgtcgtatgtccatcggtgaagcgaaagctcgtcgtgcgaagaaagagatg
gtggaagcaaacttacgtctggttatttctatcgccaagaaatacaccaaccgtggtctg
cagttcctcgacctgattcaggaaggcaacattggcctgatgaaagcggttgataagttc
gaataccgtcgtggttacaagttctctacctacgcaacctggtggatccgtcaggctatc
acccgctccatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagact
attaacaagctcaaccgtatctcacgccagatgctgcaggaaatgggtcgtgaaccgacg
ccggaagaactggctgaacgtatgctgatgccggaagacaaaatccgcaaagtgctgaaa
attgccaaagagcctatctccatggaaacgccaatcggcgacgatgaagattcgcatctg
ggtgatttcatcgaggataccaccctcgagctgccgctggattctgcgaccacagaaagc
ctgcgtgccgcaacgcacgacgtgctggcgggtcttaccgcgcgtgaagcgaaagtcctg
cgtatgcgtttcggtatcgacatgaataccgaccacacgctggaagaagtgggcaaacag
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggctctgcgcaaactgcgc
cacccaagccgctctgaagtgctgcgtagcttcctggacgattaa
DBGET
integrated database retrieval system
