Scandinavium goeteborgense: A8O29_004540
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Entry
A8O29_004540 CDS
T06630
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03410
Base excision repair
sgoe03430
Mismatch repair
sgoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A8O29_004540 (recJ)
03430 Mismatch repair
A8O29_004540 (recJ)
03440 Homologous recombination
A8O29_004540 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgoe03400
]
A8O29_004540 (recJ)
DNA repair and recombination proteins [BR:
sgoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
A8O29_004540 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
A8O29_004540 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A8O29_004540 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QKN80594
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All DBs
Position
782491..784224
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AA seq
577 aa
AA seq
DB search
MKQQIQLRRREVDSSAQLPADLPPLLQRLYASRGVLSAADLERSVKGMLPWQQLSGVDKA
VEMLYDAFREGLRIVVVGDFDADGATSTALSVLGLRQLGCSNVTYLVPNRFEDGYGLSPE
VVDQAHARGAQMIMTVDNGISSHSGVDRAHALGIPVLVTDHHLPGDTLPAAEAIINPNLR
DCDFPSKSLAGVGVAFYLMLALRTHLRDRGWFEAQGIAVPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEVSNRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLSDNIGEARQLANELDALNQTRKEIEQGMQAEALTLCEKLERSSEALPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYP
GMMIKFGGHAMAAGLSLEEARFDEFQQRFGELVTEWLDPALLQGEVVSDGPLAAADMTME
IAQMLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
CWPDNGVREVELAYKLDINEFRGNRSLQLIIDNIWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacagcagatacaacttcgtcgccgggaagtggacagctcggcgcagctgccggcc
gatctcccgcctttgctccagcggctgtacgccagccgtggggttctgagtgcagccgat
ctcgaacgtagcgtcaaaggcatgctgccgtggcagcagctttccggcgttgataaagct
gttgagatgctctacgacgcgtttcgtgaagggctgcggattgtcgtggtcggtgatttt
gatgccgatggcgcaaccagcaccgcgctgagcgtgctgggcctgcgccagctgggctgc
agcaatgttacctatctggtgccgaaccgttttgaagacggttatggcttaagcccggaa
gtggtggatcaggctcatgcccgcggcgcgcagatgatcatgaccgtcgataacggtatt
tcttcgcactccggcgtcgaccgtgcgcatgcgctgggaatccccgtactggttaccgat
caccacctgcctggcgatacgctgcctgcggcagaggccatcattaacccgaatctgcga
gattgtgatttcccatcgaaatcattggccggtgttggcgtcgcgttttatttgatgctg
gcgctgcgcacccatttacgcgatcgcggctggtttgaggcgcagggcattgcggtgcct
aacctcgcagaactgctcgatttggtggcgctgggcaccgtcgcggatgtggttccgctc
gatgctaacaaccgcattctgacgtggcaggggctgagccggatccgcgccggaaaatgc
cgtccgggcattaaagccctgttggaagtctctaatcgcgacgcgcaaaaactggcggcc
agcgatctcggttttgcgctcggcccgcgcctgaatgcggcagggcgtctggacgatatg
tccgtcggcgttgcgctgttgctcagtgacaatattggcgaggcgcgccagctcgcgaat
gaactcgatgcgctgaaccagacgcgaaaagaaatcgagcaggggatgcaggccgaagcg
ctaacgctgtgcgagaaacttgagcgcagcagcgaagcgctgcccggcggtctcgccatg
taccatcctgaatggcatcagggcgtagtcggcattctggcttcacgtatcaaagagcgt
ttccatcgcccggtgattgcctttgcgcctgcgggcgacggcacgctgaaaggctccggt
cgctcgattcagggtctgcacatgcgtgatgccctggagcgtctcgatacgctgtatcct
ggcatgatgatcaagttcggcggccacgcgatggcggcgggtttgtcgctggaagaggcg
cgctttgacgagttccagcagcgtttcggcgaactggtgaccgaatggttagacccggcg
ctgttacagggtgaagtggtatccgatggcccattggcggcagcggatatgaccatggaa
atcgcacagatgctgcgtgacgcgggcccgtgggggcagatgttcccggaaccgttgttc
gatgggcgttttcgactgctgcaacagcggctggtgggcgagcgtcacctgaaggtgatg
gtcgaaccggttggcggtggcccactgctcgacggtattgcgtttaacgtggataccgcc
tgctggccggataacggcgtgcgcgaagtggaactggcctacaagctggatattaacgag
tttcgcggcaaccgcagcctgcaactgatcatcgacaatatctggccaatttag
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