Scandinavium goeteborgense: A8O29_004830
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Entry
A8O29_004830 CDS
T06630
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A8O29_004830 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgoe03400
]
A8O29_004830 (recB)
Enzymes [BR:
sgoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A8O29_004830 (recB)
DNA repair and recombination proteins [BR:
sgoe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A8O29_004830 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
bDLD3
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QKN80649
LinkDB
All DBs
Position
845376..848915
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AA seq
1179 aa
AA seq
DB search
MTETAESLNPLRLPLTGERLIEASAGTGKTYTIAALYLRLLLGLGGEAAFVRAVDVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRNRTDNPLYASLLTEIPDPQQAADVLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESRLRFQACADFWRRHCYPLPREVA
EAIHASWKGPQDLLKSIDRYLQGEAPQLKTPPSDETLIARHQQIVAQLSALKAQWQAAVG
DIADIIESSDINRSKFNRGNQGKWIEKISAWAEAENTGYQLPDSLEKFAQSFLISRTKAG
GNPPLHPLFDTIEALLAAPPSLNDLVISRAMVEIREAVAREKQRRGELGFDDMLSRLDDA
LQGESGDALAAAIRQRFPVAMIDEFQDTDPQQYRIFRRIWRQQPDTALLLIGDPKQAIYA
FRGADIFTYMRARGDVAAHYTLDTNWRSAPGVVESVNRLFGLSDNPFMFRDIPFLPVKPA
PKNQGLRFEMNGEDQPAMSFWLMPGNNVSAGDYQAFMAQMCAGQIRDWLSAGQRGDALLW
RGETSRPVQASDITVLVRNRQEAALVRDALNALGIPSVYLSNRDSVFETPEAQELLWLLQ
AVLAPERESSLRTALASSLFGLNAQDIERLNLDELAWDALVEEFSEYRLLWQKRGVMAML
RALMAARNIAENLLVTHGGERRLTDILHLSELLQEAAVQLESEHALMRWLGQQIGGPDSG
SSSQQMRLESDKHLVQIVTVHKSKGLEYSLVWLPFIARYRKQDQAFYHDRTSFAAVLDLH
NGEESLELAEAERLAEDLRLLYVALTRAIWHCSLGIAPLSPRRSDKATDTELHQSALGRL
VQKGEAKDAAGLEACLRELCNEHIALHIPTLPEGGRWQAITPEMPELRAREMQRRIIDDW
RVTSYSGLQQRGHSVAQDLLPRLDIDAAGVADVSDEPELTPHHFPRGASPGTFLHSLFEE
IDFTQPVDEPWMQEQLERNGFEAKWAPVLTQWLTTVLQTPLSGAGISLSQLTAKNKQVEM
EFYLPIEQLLMPQALDALIRQHDPLSAGCPPLDFRQVSGMLKGFIDLVFRHDGRYYLLDY
KSNWLGENSEAYTQAAMAQAMQSHRYDLQYQLYSLALHRYLRHRLSDYDFDAHFGGVIYL
FLRGVDGGEGGQGIFTTRPDRALIDGMDALFAGDAQEVM
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaccgccgagtccctaaatcccctgcgcttgccgttaaccggtgagcgcctg
attgaagcctcagcgggcaccggaaaaacctacaccatcgccgcactctatctgcggctg
ttgcttggactgggtggcgaagccgcctttgtccgcgcggtcgatgtcgaagagctgctg
gtggtgaccttcaccgaagccgccaccgaagaactgcgtggccgcatccggagtaacatc
cacgaactgcgcattgcctgcctgcgtaaccgcaccgataacccgctttatgccagcctg
ctcaccgaaattcctgatccgcaacaggcggcggacgtgcttttgctggccgaacggcaa
atggacgaagcggcagtgtttaccattcacggtttctgtcagcgcatgctgagcctcaac
gcgtttgagtcgggtatgttgttcgaacagcagctgattgaagatgaatctcgcctgcgc
ttccaggcctgtgccgatttctggcgacgccactgctacccgcttccgcgtgaggtggcc
gaggccattcatgccagctggaaagggccgcaggacctgctgaaatccatcgatcgctat
cttcagggcgaagccccgcagctcaaaaccccgccctcggatgaaacgctgattgcccgc
catcagcagattgtggcgcagctgagcgccctgaaagcgcaatggcaggcggcggtcggg
gacattgccgatattatcgaaagctccgatatcaaccgaagcaaattcaaccgcggtaat
cagggtaaatggatagagaagattagcgcgtgggctgaggcagaaaataccggctatcag
ctccccgattcgctggagaaatttgcccaatcgttcctgatctcacgcactaaagcgggc
ggaaacccgccgctgcatccgctgttcgataccatcgaagcgctgctggcggcaccgccg
tcactcaatgatttggtcatctcccgggcgatggttgaaatacgtgaagccgtggcgcgg
gagaaacagcgacgtggcgagctgggctttgacgacatgctgagccgtctggacgatgca
ttgcagggcgaaagcggtgacgcgttggcggccgctattcgtcagcgtttcccggtggca
atgatcgatgaattccaggataccgatccgcagcagtaccgcatttttcgacggatctgg
cggcagcaacccgatactgcgctgctgttgattggcgatcctaaacaggctatttacgcg
tttcgcggcgcggatatttttacctacatgcgcgcgcgtggcgatgtagccgcccattac
accctcgacaccaactggcgttcggccccaggcgtggtggaaagcgtcaaccggcttttt
ggcctgtctgataatcctttcatgttccgtgatattccctttttaccggtgaagcccgcg
cccaaaaatcaggggctgcgctttgagatgaacggtgaagaccagcctgcgatgagcttt
tggctgatgcctggcaacaacgtcagcgccggggattatcaggcgttcatggcgcagatg
tgcgccgggcaaattcgcgactggctgagcgccggtcagcgtggtgatgcgctgctatgg
cgcggtgaaacgtcacgtccggttcaggcttcagacattaccgtgctggtgcgtaatcga
caggaagcggcgctagtgcgtgatgcgctgaatgcgctgggtattccgtcggtgtactta
tctaaccgcgacagcgtgtttgaaacgccagaagcgcaggaactgctgtggctactacaa
gccgtgttggccccggaaagggaaagcagcctgcgcaccgcgctcgccagctcgctgttt
ggtctgaatgcacaggacattgagcgcctgaatttagatgaacttgcctgggatgcgctg
gtggaagagttcagcgaatatcgcctgctctggcaaaagcggggcgtgatggcgatgctg
cgtgcgctgatggcagcgcgcaatatcgcagaaaatttactggtgacgcacggcggtgaa
cgtcgtctgaccgatattctgcatctaagcgagctgttacaggaagccgccgtgcaactc
gaaagtgaacatgcgctgatgcgatggctggggcagcagattggcggaccggacagcgga
tcgtcgagccagcaaatgcgcctggaaagcgacaagcacctggtgcaaatcgttacggtg
cataaatcgaaagggctggaatactctctggtctggctgccgtttatcgcccgctatcgg
aaacaggatcaggcgttttatcacgaccgcacgtccttcgcggcggtgctcgatttgcac
aatggcgaagaaagcctggagcttgccgaggccgagcgtctggcagaagatttacgcctg
ctgtacgtggcgctgacccgcgcgatttggcactgcagtttaggtattgcgccgctcagt
ccgcgccgcagcgataaagccaccgacaccgagttgcaccaaagtgcgctgggccgcctg
gtgcaaaaaggcgaagccaaagacgcagcgggccttgaagcctgtctacgtgaactctgt
aacgaacatattgctctgcatatcccgaccctcccggaaggcgggcgctggcaggcgatt
acgcctgaaatgccggaactacgcgccagagagatgcagcgacgcatcatcgacgactgg
cgagtcaccagctattccgggcttcaacagcgagggcacagcgtggcgcaggatctgctg
ccgcgcctggatatcgacgcggcgggcgtggctgacgtgtctgacgagccggaactgacg
ccgcatcatttcccgcgcggagcatcaccgggcaccttcctgcatagcctgtttgaagaa
atcgattttacacagccagtcgatgaaccgtggatgcaggaacagctcgagcgcaacggc
tttgaggctaaatgggctccggtattaacgcagtggctgaccaccgtgctgcaaacgcca
ctctccggcgcgggcatttcgctgagccagctcacggccaaaaataagcaagtcgagatg
gagttctatctgccgatagaacaactgctgatgccgcaggcgctggatgcgttaatccgc
cagcatgacccgctttccgcgggctgtccgccgctcgatttccgacaggtgagcggtatg
cttaaaggctttatcgaccttgttttccgccatgacgggcgttattacctgctcgactat
aaatccaactggctcggcgaaaatagcgaggcttacacccaggccgcaatggcgcaggcg
atgcagtcgcaccgctacgacctgcaatatcagctgtacagcctcgcgctgcaccgttat
ctgcgccacaggctgtcggattacgattttgacgcccacttcggcggcgtgatttatctg
ttcctgcgcggcgtagacggcggcgaaggcgggcaggggatctttaccacccggcctgat
cgcgcactgatcgacggtatggatgcgctgtttgcgggtgatgcacaggaggtgatgtga
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