Scandinavium goeteborgense: A8O29_004980
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Entry
A8O29_004980 CDS
T06630
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sgoe
Scandinavium goeteborgense
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sgoe03009
]
A8O29_004980 (rlmD)
Enzymes [BR:
sgoe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
A8O29_004980 (rlmD)
Ribosome biogenesis [BR:
sgoe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
A8O29_004980 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
PCMT
MTS
Methyltransf_11
Cons_hypoth95
Methyltransf_4
Methyltransf_23
Methyltr_RsmB-F
FtsJ
Methyltransf_15
TPMT
CMAS
Ubie_methyltran
PrmA
Ribosomal_L22
Motif
Other DBs
NCBI-ProteinID:
QKN80675
LinkDB
All DBs
Position
878896..880194
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AA seq
432 aa
AA seq
DB search
MAQFYSAKRRVTTREIITVTVSDLDPFGQGVARHNGKTLFINGLLPGESAEIRITEDKKQ
YARGQVKRRLNDSLEREKPRCPHFGVCGGCQQQHASVALQQRSKQAALARMMKHDVDEVL
SASPWGYRRRARLSVNYQPKAQHLQMGFRKAGSNDIVEVTQCPVLVPTLEALLPAVRDCL
ASLSAVRHLGHVELVQADNGPLMVLRHNAPLSAADKAKLEQFSHSHQLALWLAPQSDSIE
HVNGELPWYSSDGLRLTFSPRDFIQVNDGVNQRMVETALAWLDVQPQDRVLDLFCGMGNF
TLPLAKRAASVVGVEGVPALVEKGQQNAVQNNLHNVTFFHENLEEDVTQQAWAQNGFDKI
LLDPARAGAPGVMQHVVKLAPARVVYVSCNPATLARDSEVLLAAGYQIQRLAMLDMFPHT
GHLESMVLFEHI
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgccgcgtgacgacgcgcgagatcataaccgtgacg
gtgagcgacctggaccctttcggtcagggggtagcgcgccataacgggaaaacactgttt
atcaacggtttgttgcccggtgaaagcgctgaaattcgcatcaccgaggataaaaaacag
tatgcacgcggacaggtaaaacgtcgactgaacgacagccttgaacgtgagaagccgcgc
tgcccgcactttggcgtgtgcggtggctgtcagcagcaacatgccagcgtcgcgttgcaa
cagcgcagcaaacaggcggcgttagcgcgcatgatgaaacatgacgtggatgaggttctc
tctgcgtcgccgtggggctatcgccgtcgtgcacgtctgagcgtgaattatcaaccgaag
gctcagcatttgcagatgggttttcgcaaggcgggctcgaacgatatcgtcgaggtcacg
caatgccccgtgctggtgcccactcttgaggcactgctgcctgcggtgcgcgactgcctg
gcgtcgctttcggctgtccgtcatttagggcacgtggaactggtgcaggctgataacggt
ccgctgatggtgttgcgccataacgcaccactttccgcggccgataaagcaaaactggaa
cagttttcgcattcacaccagctggccctgtggctggcaccacaaagcgatagcattgaa
cacgttaacggcgaattgccctggtacagttcagacgggctacgcttaacgttcagtccg
cgcgattttattcaggtcaacgacggcgtgaatcagcggatggttgaaacggcgctggcg
tggctggatgttcagccccaggaccgcgttttggatctgttttgcgggatgggcaacttt
acgctgccgctggcaaaacgtgcggcaagcgtggtgggcgtggaaggcgtgcccgcactg
gttgagaaaggccagcagaacgcagtacagaataacctgcacaatgtgaccttcttccac
gaaaatcttgaagaagacgtcacccagcaggcctgggcgcaaaacggttttgacaaaatt
ttactcgatcctgcgcgcgcgggcgcaccgggcgtgatgcagcatgtcgtaaaattagcc
cccgctcgggtggtgtatgtatcctgtaatccggcaacgctggcgcgtgatagcgaagtg
ctgctggcggcgggctatcaaattcagcgtctggcaatgctggacatgttcccgcacact
gggcacctggagtcgatggtgttgttcgagcacatataa
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