Scandinavium goeteborgense: A8O29_005960
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Entry
A8O29_005960 CDS
T06630
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sgoe
Scandinavium goeteborgense
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sgoe03009
]
A8O29_005960 (srmB)
Enzymes [BR:
sgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A8O29_005960 (srmB)
Ribosome biogenesis [BR:
sgoe03009
]
Prokaryotic type
rRNA helicases
A8O29_005960 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_11
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QKN80848
LinkDB
All DBs
Position
complement(1072540..1073880)
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AA seq
446 aa
AA seq
DB search
MTVTTFSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKNTHLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW
RKQTMLFSATLEGDAIKDFSERLLQDPVEVSATPSTRERKKIHQWYYRADDVKHKTALLI
HLLQQEDATRSIVFVRKRERVHELASWLREKGINNCYLEGEMVQAKRNEAILRLTDGRVN
VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLL
SKIGRYIEEPLKARVVEDMRPQTRVPSEKLQGKPSKKVMAKREEKKKAEKEKPRVKNRHR
DAKNIGKRRKPSAVAAAATEPKKTEE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaactagaactcgacgatagccttctggatgcgctccag
gaaaaaggcttcacacgcccgaccgccattcaggccgctgcgatcccgcctgcgctcgat
ggccgtgatgtcctcggttctgcgccgacaggcaccggtaaaacggcggcgtatctgctg
ccagcgttgcagcacctgctcgacttcccgcgcaaaaaatctggcccgccgcgtatcctg
attgtgaccccaactcgcgaactagcgatgcaggttgccgatcacgctcgcgaactggct
aaaaatacccatttagacatcgcaaccatcaccggcggcgtggcctatatgaaccacgct
gaagtgttcagtgaaaaccaggacatcgtggtggccaccaccggacgtctgctgcagtac
atcaaagaagaaaactttgactgccgcgcggttgaaacgctgatcctcgatgaagcagac
cgcatgctggatatgggctttgcccaggatatcgaaaccatcgccgcggaaactcgctgg
cgtaagcagaccatgctgttctctgcgacgctagaaggcgacgctattaaggacttctcc
gagcgtctgctgcaagatccggtggaagtgtctgcgacaccgtccacccgcgaacgcaag
aagatccaccagtggtactaccgtgccgatgacgttaagcataaaaccgcgctgttgatc
caccttctccagcaagaagacgcgacgcgttccatcgtgtttgtgcgtaaacgtgagcgt
gtgcatgagctggctagctggctgcgtgagaaaggcatcaacaactgctatctcgaaggt
gagatggttcaggccaaacgtaacgaagcgattttacgcctgaccgacggccgagtgaat
gtgctggttgctaccgacgttgctgcacgcgggattgacattccggatgtaagccacgtc
ttcaacttcgacatgccacgtagcggtgacacctacctgcaccgtatcggccgtacgggc
cgtgccggacgtaaaggcatcgcgatttcgttagttgaagcgcatgaccacttgctgctg
agcaaaattggccgctacattgaagagccgctgaaagctcgcgtggtcgaagacatgcgt
ccgcaaacgcgcgtcccaagcgagaagctgcaaggcaagccgtctaagaaagtgatggct
aaacgcgaagagaagaaaaaagcggaaaaagaaaaaccgcgcgtgaagaatcgccatcgc
gatgctaaaaacatcggtaagcgccgtaagccaagtgccgtcgctgccgcggcgaccgag
ccgaagaaaaccgaagagtaa
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