Scandinavium goeteborgense: A8O29_012255
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Entry
A8O29_012255 CDS
T06630
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgoe
Scandinavium goeteborgense
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgoe03019
]
A8O29_012255 (hrpA)
Enzymes [BR:
sgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A8O29_012255 (hrpA)
Messenger RNA biogenesis [BR:
sgoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A8O29_012255 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
NTPase_1
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QKN82019
LinkDB
All DBs
Position
complement(2387246..2391148)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQHKMTFSQLHQQLDGLMLRDKTRFARRLHGVKKVKNPESQQAIMQEMAKEISQAAGK
VLLREAARPAITYPENLPVSQKKQDIYNAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYFRELLPKRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTFPVDVRYRPIVEDADDTERDQLQAIFDAVDELGQESPGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIGAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTVYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYIGEQQKALSSNQFRRLCRTEFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERSQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHAMVEGDWQTRHAFFRENLKLRNEIEELE
HKSRRRDILVDDESLFEFYDQRISHDVISARHFDNWWKLASRETPDLLNFEKSMLIKEGA
DDVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELLIALIKSLPKPVRRNFVPAPNYAEALLGRMTPLELPLLDSMERELRRMSGVTIDRDDW
HWDQVPDHLKMTFRVIDDKNKKLQEGRDLTALKDALKGKVQETLSAVADDGIEQSGLHLW
SFGSLPESYEQKRGNYKMKAWPALVDERDSVAIKLFDNPLEQQQAMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEENYAALHEK
VRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDVKAQMTGLVYRGFVTG
NGFKRLGDTLRYLNAIEKRLEKLAIDPHRDRAQMLKVESVQQAWQQWLNKLPPSRRNDDD
VLEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQITA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacacaaaatgaccttttcgcagcttcatcaacagctcgacggcctgatg
ctgcgtgataaaacccgcttcgcccgccgtctgcatggcgtgaagaaggttaaaaatcct
gaatcacaacaggccattatgcaggagatggcgaaagagatttcacaggcagcgggtaaa
gttctgctgcgtgaagcggctcgcccggcgataacctacccagaaaacctgcccgtcagt
cagaaaaagcaggatatctacaacgctattcgcgaccatcaggtggtgattgtggcgggg
gaaaccggctcggggaaaaccacccagctgccgaaaatctgcatggagctgggtcgcggc
gttaaagggctgatcggtcatactcagccgcgtcgtctggcggcgcgcaccgtggccaac
cgtattgccgaagagctgcaaacggagccgggcggttgcatcggttacaaggtccgcttc
agcgatcatgtcagcgacaacaccatggtcaagctgatgaccgacggtattctgctggcg
gaaatccagcaggaccggctgctgatgcagtacgacaccatcattatcgatgaagcgcac
gaacgcagcctgaacatcgattttctgctcggctatttccgcgaactgctgcctaagcgt
ccggatctgaaaatcatcatcacgtcggcgaccatcgatccggaacgtttctcaaaacat
ttcaataacgcgcccatcatcgaagtgtctggccgaaccttcccggtcgacgtgcgctat
cgtccgattgttgaagatgccgatgataccgagcgcgatcagttgcaggcgattttcgat
gcggttgacgaactggggcaggagagtccgggcgatatcctgattttcatgagcggcgag
cgcgaaatccgtgacaccgccgatgcgctcagtaagcgcgacctgcgccatactgaaatt
ctgccgctgtacgcccgcttatcaaacagcgagcaaaaccgcgtgttccagtcacacagc
ggacggcgtatcgtgctggcgaccaacgtcgcggaaacgtcgctgactgtaccggggatc
aagtacgtcattgacccgggcaccgcgcgtatcagccgttacagctatcgcaccaaagtg
cagcgtttgccgattgagccggtttctcaggcgtcggcgaatcagcgtaagggccgctgc
ggacgcgtctcggaaggcatctgtattcgtctctattcggaagatgatttcctgtcgcgt
ccagaatttaccgatccggaaattcttcgtaccaacctggcgtcggtcattttgcagatg
accgccctggggctcggtgatattggcgctttcccgttcgtggaagcgccggataaacgc
aatattcaggacggcgtgcgcctgctggaagagctgggcgcgataaccaccgacgaacag
cagaccgtatacaaactcacgccgatgggccgccagctgtcgcagctgccggtggatccg
cgtctggcgcgtatggtgctcgaggcgcagaaacacggctgcgtgcgtgaggcgatgatc
atcacctcggcgctgtcgattcaggatccgcgtgaacgtccaatggacaagcagcaggct
tctgacgaaaaacaccgccgtttccatgacaaagagtccgacttcctggcgttcgtgaat
ctgtggaattatatcggcgagcagcaaaaagcgctgtcgtcgaatcaattccgccgcctt
tgccgcactgaatttctcaactatctgcgtgtacgcgaatggcaggacatctacacccag
ctgcgtcaggtggtgaaagagcttggcattccggtgaacagcgaaccggcagagtaccgt
gaaattcatgttgccttgctgaccgggctgctctcgcacatcggtatgaaagacgctgat
aaacaggaatttaccggcgcgcgcaacgcccgtttctcgatcttcccgggttccggatta
ttcaaaaagccgccgaaatggacgatggtcgccgaactggttgaaaccagccgcttgtgg
ggccgcattgccgcgcgcatcgatccggaatgggtcgagcctgtcgcgcagcatttaatc
aaacgttcctacagcgaaccgcattgggagcgctcgcaaggcgcggtgatggccaccgaa
aaagtgactgtctacggcttgccgattgtcgccgcccgcaaggtcaactatagccagatt
gacccggcgctgtgccgtgagctgtttattcgccacgcgatggtggagggcgactggcaa
acgcgtcacgccttcttccgcgaaaacctcaaactgcgcaacgaaattgaagaacttgaa
cataaatcccgtcgccgcgacattctggtagacgatgaatccctgttcgagttttacgac
cagcgcatcagccatgacgtgatttccgcccgccatttcgataactggtggaaactggcc
agtcgcgaaacgcctgatttgctcaactttgaaaaaagtatgctgattaaggaaggggcc
gatgacgtcagcaaactcgactatccgaacttctggcatcagggcaacctcaagctgcgc
ctgagctaccagtttgagccgggcgcggatgccgacggcgtgacggtgcatattccgttg
ccgttgctcaatcaggtcgaagaatccgggttcgagtggcaaatccctggcctgcgccgc
gagctattaatcgcgctgattaaatcgctgccgaaaccggtgcgccggaactttgtgccc
gcgccgaattacgccgaagcgctgttgggccgcatgacgccgctggagctgccgctgctg
gattcgatggagcgcgagctgcgccggatgagcggtgtgacgattgaccgcgacgactgg
cactgggatcaggtgcccgatcacctgaaaatgaccttccgcgtcattgacgacaaaaac
aagaaacttcaggaaggtcgagacctgacggcgctgaaagatgcattaaaaggcaaagtt
caggaaacgctgtctgcggtagcggacgacggtatcgaacagagcgggttgcatctctgg
agctttggttcgctgcctgaaagctatgagcagaagcgcggcaattacaaaatgaaggcc
tggcctgcgctggtggacgaacgcgacagcgtggccatcaaactgtttgataatccgctg
gaacagcagcaggcgatgtggcgtggtctgcgccgtttactgctgctgaatattccgtcg
ccgattaagtatttgcacgagaagctgccgaacaaagccaagctgggcctgtactttaac
ccgtacggtaaagtgctggatttgattgacgactgtatttcctgcggcgtcgacaaactc
atccacgaggctggtggtccggtgtggaccgaagagaactatgcggcgctgcatgagaaa
gtccgcgcggagctcaacgacacggtggtggaaattgccaaacaggtcgaacagatcctg
acggcggtattcaatatcaacaaacgcctgaaaggacgcgtggatatgacgatggcgctg
ggtctctctgacgtgaaagcgcagatgaccgggctggtgtatcgcggatttgtcaccggc
aacggctttaagcgtcttggcgatacgttgcgttatctcaacgcgattgagaaacgactg
gaaaaattagccatcgatccacatcgggatcgtgcgcagatgctgaaagtcgaaagcgtg
cagcaggcctggcagcagtggttgaataagctgccgccgtcgcgtcgtaatgatgacgac
gtgctggaaattcgctggatgattgaggaactgcgggtgagctattttgcgcaacagttg
ggcacgccgtatccgatttctgataaacggatattgcaggcgatggagcagattacggcg
tag
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