Scandinavium goeteborgense: A8O29_013000
Help
Entry
A8O29_013000 CDS
T06630
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sgoe
Scandinavium goeteborgense
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgoe03016
]
A8O29_013000
Enzymes [BR:
sgoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A8O29_013000
Transfer RNA biogenesis [BR:
sgoe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A8O29_013000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
QKN82158
LinkDB
All DBs
Position
2529156..2531096
Genome browser
AA seq
646 aa
AA seq
DB search
MLQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDAQKSYFISPPQMKKVMHGDRI
IATIHSGDKGKESAEPEELVEPFLTRFVGRVQKKDDRLSIVPDHPLLRDAIQCRPVRSLE
HDFKEGDWAVAEMRRHPLKGDRSFYAELTHFITYGDDHFVPWWVTLARHNLEKVAPEGTA
TEMLDEGLERRDLTALDFVTIDSASTQDMDDALYAEEVADGKLHLTVAIADPTAWIAEGS
KLDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMIISADGTIEDDIE
FFTATIESKAKLAYDDVSDWLEGNGSWQPQNDAIAGQIKLLERICALRGEWRHNYALVFK
DRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHTGF
DPAKTEQLSELMKTHDVHVDPQEVLTLDGFCKLRRELDAMPTGFLDSRIRRFQSFAEIST
EPGPHFGLGFEAYATWTSPIRKYGDMVNHRLLKAIIKGETASRPQEDATIQMAERRRLNR
MAERDVADWLYARFLNDKAGTDTRFAAEIIDISRGGMRVRLVDNGAVAFIPAPFLHAVRD
EMVCSQENGTVQIKGETVYKVTEVIDVTIAEVRMETRSVIARPFQA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggataacccgctgcttgcacagctaaaacagcaacttcattcccagacccct
cgcgctgaaggggtggtaaaaggcaccgaaaaaggctttggttttctcgaagtcgatgcc
cagaaaagctatttcatctctccaccacagatgaaaaaagtgatgcatggtgaccgcatc
attgccaccatccatagtggcgacaaaggaaaagaaagcgccgaaccagaagaactggtc
gagccgttcctgacgcgttttgttggccgcgtgcagaagaaggacgatcgcctgtcgatc
gtacccgatcatccgctgctgagagatgccatccagtgccgccctgtgcgcagcctggaa
cacgattttaaagagggtgactgggctgtagcagaaatgcgccgtcatcctttgaaaggc
gaccgcagcttctacgcggaactcacccacttcattacctacggcgacgatcatttcgtt
ccatggtgggtgacgctggcgcgccataatcttgagaaagtggccccggaaggcaccgcg
accgaaatgctggacgaaggtctggagcgtcgcgacctgactgcgctggacttcgtgact
atcgatagcgccagcacccaggatatggacgatgcgctgtatgcagaagaagtcgctgac
ggaaaactgcatctgaccgtagccatcgccgatccgaccgcgtggattgccgaaggtagc
aagctggataacgccgcgaaaattcgcgcgttcaccaactacctgccgggcttcaatatc
ccgatgctgccgcgtgaactgtctgacgacctgtgctctctgcgtgcgaatgaagtgcgt
ccggttctcgcctgccgcatgatcatctccgccgatggcaccatcgaagacgatatcgaa
ttctttaccgcgaccatcgaatccaaagccaagctggcctatgacgacgtttctgactgg
ctggaaggcaacggtagctggcagccgcagaacgacgcgatcgccggacaaatcaaactg
ctggagcgtatttgcgccctgcgcggcgagtggcgtcataactacgcgctggtgttcaaa
gaccgcccggactaccgcttcgtgctcggtgaaaaaggtgaagtgttggatatcgtcgct
gaaccgcgtcgcatcgccaaccgcatcgttgaagagtctatgattgccgccaacatctgc
gccgctcgcgtgctgcgcgataagctcggtttcggtatctacaacgttcacaccggtttt
gatcctgcgaaaacagaacagctttccgagctgatgaagacccacgacgtgcacgtcgat
ccgcaggaagtgctgacgctggacggtttctgcaagctgcgccgcgaactcgacgcgatg
ccaaccggcttcctcgatagccgcattcgtcgcttccagtccttcgcggaaatcagcacc
gagccaggcccgcatttcggtctgggctttgaagcttacgccacctggacttcaccaatt
cgtaaatacggcgacatggtcaaccatcgtctgctgaaagcgattatcaaaggtgaaacc
gcgtctcgtccacaggaagacgctactatccagatggcagaacgtcgccgcctgaaccgt
atggccgagcgtgacgtagccgactggctgtatgcgcgtttcctgaatgacaaagccggc
accgatacccgttttgccgctgaaatcattgatatcagccgcggcgggatgcgcgttcgt
ctggtggataacggcgcggtagcatttattccggcaccgttcctgcacgccgtgcgtgat
gaaatggtctgcagccaggaaaatggcaccgtgcaaatcaaaggcgaaaccgtttataaa
gtgactgaggttatcgacgtcacgatcgccgaagtcagaatggaaacccggagcgttatc
gcgcgtcctttccaggcgtaa
DBGET
integrated database retrieval system
