Scandinavium goeteborgense: A8O29_015640
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Entry
A8O29_015640 CDS
T06630
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8O29_015640 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgoe03019
]
A8O29_015640 (rhlE)
Enzymes [BR:
sgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A8O29_015640 (rhlE)
Messenger RNA biogenesis [BR:
sgoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8O29_015640 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
DUF6482
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKN82656
LinkDB
All DBs
Position
complement(3076122..3077522)
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AA seq
466 aa
AA seq
DB search
MSFETLGLNAEILRAVEEQGYRQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL
QLLSQKEPHAKGRRPVRALILTPTRELAAQVGENVREYSQYLNIRSMVVFGGVSINPQMM
KLRSGVDVLVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPPK
RQNLLFSATFSDEIKGLASKLLHNPLEVEVARRNTASAQITQHVHFVDKKRKRELLSQMI
GEGDWKQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERVLKKEIPRIAVEGYEVDPSIQAEPIQNGRQGRGGRGGQSQGQPRRNDGGQARRSDKPA
GNGQARRSDKPAAGNGQSRRSEGDQPRKAADGAARRRRPRKPAAAQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaacccttggcctgaacgccgagatcctgcgcgcagtcgaagagcagggt
tatcgtcagcctacccctatccaacaacaagctattcctgctgtgctgcagggccgcgat
ctgatggccagtgcccaaaccggtaccggtaagaccgcaggctttaccctgccgctgctg
caactgctttcgcagaaagaaccccatgctaaaggccgtcgtccggtccgcgcgctgatc
ctcaccccaacccgcgaactggcggctcaggtgggcgagaacgtccgtgaatatagccaa
tacctgaacatccgttcgatggtggtattcggcggcgtgagcatcaacccgcagatgatg
aaactgcgcagcggtgttgacgtgctggtagcgaccccaggtcgtctgcttgacctcgaa
caccagaacgcggtgagcctcgataaagtcgagattttggtccttgatgaagccgaccgc
atgctggacatgggctttatccacgacatccgtcgcgtgctggcgaaactgcctccaaag
cgtcagaacctgctgttctccgcgaccttctctgatgaaatcaaaggcctggcgtccaag
ctgctgcacaacccactggaagttgaagtggcgcgtcgcaacaccgcttccgcgcagatc
acccagcacgtgcatttcgttgataagaaacgcaagcgggaactgctgtctcagatgatc
ggcgaaggcgactggaaacaggtgctggtgtttactcgtaccaaacacggcgcgaaccac
ctggctgaacagctgaacaaagacggcattcgcagcgccgccattcacggcaacaagagt
cagggcgcgcgtacccgtgcactggctgacttcaaatccggcgacctgcgcgtgctggtg
gcaactgacatcgccgcccgtggtctggatatcgaagaactgccgcacgtcgtgaactac
gagctgccgaacgtaccagaagactacgtgcaccgtatcggtcgtaccggacgtgctgcg
gccaccggtgaagcgctgtcgctggtgtgtgtcgatgaacacaaactgctgcgtgacatc
gaacgcgtgctgaagaaagagatcccacgtatcgccgttgaaggctacgaagtggaccca
agcatccaggcggagccgattcagaacggtcgtcaaggccgtggcggtcgcggtggtcag
agtcagggccagccacgtcgtaatgacggtggtcaggcacgccgcagcgacaagccagcc
ggaaacggtcaggctcgccgcagtgataaaccggctgccggcaacggccagtcgcgtcgt
agcgaaggtgaccagccgcgcaaagccgctgatggcgccgcgcgtcgtcgtcgcccgcgc
aaacctgccgccgcgcagtaa
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