Scandinavium goeteborgense: A8O29_018285
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Entry
A8O29_018285 CDS
T06630
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03420
Nucleotide excision repair
sgoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8O29_018285
03430 Mismatch repair
A8O29_018285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgoe03400
]
A8O29_018285
Enzymes [BR:
sgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8O29_018285
DNA repair and recombination proteins [BR:
sgoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A8O29_018285
MMR (mismatch excision repair)
Other MMR factors
A8O29_018285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
AAA_11
PFU
Motif
Other DBs
NCBI-ProteinID:
QKN83149
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Position
complement(3641470..3643146)
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AA seq
558 aa
AA seq
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MDDQKRGLINIKSNLLVSACPGAGKTKLLIGMLEDNLYHNEGFRWHIVLTHTNAAADEIS
SRIDNLNIDTERVWCGTIHSFLLEWVVKKYTGAIPRLVDGFSLLSEYKQRKIIQSIEADK
KLETRIRYNCDEEGNSFVVPYCHAVDSKDKELLVIQEYNRIKEDNKYIDFDDIIRLGVDF
LNDNPKICEHLSKLIGNIYLDESQDTSLIQLKALSYITRYNRVSVFIVGDNDQAIFQDLG
VSVKNKDILKSELQLSELRHETLSGCYRSSTSLVNYYKKYSASRNDVISMREGDGRLPII
RDISKGELPKRIFNLINKYHLKYNGVDGIAIIGPDKYYLMGLINDLYDISECFVYDFQST
NPLYCLRNTVFYELIKLVLLDVNVVNYQRRHSLARKIIDSIPELSHLSPLQLKRDLKEFQ
SVKNNFILWLKELYVFLEVKYQRSIKIETDYNICNAAASVAKIKAGMGAIKKMINKDKNV
VSVSTIHGSKGEEYDYVITIGYHDKVVPHQSSYDKGNDYAQDIANRLMYVAFSRAKDYMS
IFIDDRREVSPFFIRELD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcaaaagagaggtttgataaatattaaaagcaatctattggttagcgcctgc
cctggggctgggaaaacaaaactattaattgggatgcttgaggataacttatatcataat
gaaggttttcgttggcacattgtactaactcatactaacgctgcagctgatgagatctca
agcaggatagataatctcaatatagatactgagagggtttggtgcggtactattcattca
tttcttttagagtgggttgttaaaaaatacactggagccatcccacgacttgtggatggg
ttttctttgctttcagaatataagcaaaggaagataattcaaagtatagaggctgataaa
aaattagaaacaagaatacgttataattgtgatgaagaaggtaattcatttgtagtacct
tattgccatgcggtggatagtaaagacaaagagttgctggtcattcaagaatataatcga
atcaaagaggataataagtatattgattttgatgatattataaggttgggtgttgatttt
cttaatgacaatccaaaaatatgtgagcatctttcaaagttgattggtaatatttatttg
gatgagtcgcaagacaccagcttaatccagcttaaggctttgtcatatataacgagatat
aatcgtgtttctgtttttatagttggtgataatgatcaggctatttttcaggatcttggt
gtatctgtaaaaaacaaagatattctaaagtctgagttacaattgtctgaattaagacat
gaaacgttgtctggttgttaccggtcgtctacatcactggtcaattattataaaaaatat
tccgcttcgcgtaatgatgttatttctatgcgggaaggtgatggtagactgcctattata
agagatatatcgaaaggtgaattgcctaaaagaatcttcaatctaataaataaatatcac
ttaaaatataatggtgttgatggcatagcgattataggcccggataaatactacctcatg
ggactgatcaatgatttgtatgatatttctgagtgttttgtttatgattttcaatctaca
aatccactttattgtctaagaaatacagttttttacgaattaataaagttagttcttcta
gatgtaaatgttgttaactatcaaagaaggcattctttagcaagaaagataattgactca
attcctgagttaagccatctaagtccattgcagcttaagcgtgatttaaaagaatttcaa
tctgtaaaaaataattttattttatggttgaaagagctttatgtctttttagaagtgaag
tatcaaagatccattaagatagagacagattataatatttgtaatgcagcagcttccgta
gcgaaaattaaagctggtatgggggcgataaaaaaaatgataaacaaagataaaaatgtt
gtatctgtgtcaacaatacatggttcaaagggtgaagaatatgattatgtaataactatt
ggatatcatgacaaagtagttccacatcaatcgtcttatgataaaggaaatgattatgct
caagatattgctaacagattaatgtatgtagctttttctagagcaaaggattacatgagc
atatttatagatgatcgaagggaggttagccctttctttattcgagaattggactga
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