Scandinavium goeteborgense: A8O29_018680
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Entry
A8O29_018680 CDS
T06630
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03030
DNA replication
sgoe03430
Mismatch repair
sgoe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A8O29_018680 (dnaE)
03430 Mismatch repair
A8O29_018680 (dnaE)
03440 Homologous recombination
A8O29_018680 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgoe03032
]
A8O29_018680 (dnaE)
03400 DNA repair and recombination proteins [BR:
sgoe03400
]
A8O29_018680 (dnaE)
Enzymes [BR:
sgoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A8O29_018680 (dnaE)
DNA replication proteins [BR:
sgoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A8O29_018680 (dnaE)
DNA repair and recombination proteins [BR:
sgoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A8O29_018680 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QKN83212
LinkDB
All DBs
Position
complement(3721526..3725008)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GLKPIIGADFHVQSELFADELTQLTVIATNNEGYQNLTLLISRAYQRGYGAQGPYIDRDW
LVEQKEGLILLSGARMGDVGRALLRGNMALAEQCAAFYEEHFPDRYYLELIRTGRQDEEN
YLHAAVKLAEERGLPVVATNDVRFIDASDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM
RNEDEMCELFSDIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVLKSKEGL
EDRLEFLFPDPAVRAEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALSITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVRGLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDESGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAILEARNEGGYFRELFDLCARVDTKKLNKRVLEKLIMSGAFDRLGPHRAALAN
SLPDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASCQPWPEQIVLDGERETLGLY
LTGHPITQSLREIERYVGGLRLKDMHPTDRGKVTTAAGLVIASRVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNELRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgtttcgtacacctgcgggtgcatagcgactactccatgattgatggg
ctggcgaagaccgggccgctggtgaaaaaggcggccgcgctcggcatgcctgcgctggcg
atcaccgatttcaccaatctttgcggtctggtgaagttctacggcgcgggacacggagcc
ggtctgaagccgattatcggtgcggatttccacgttcaaagcgagctgtttgccgatgag
ctgacgcagctgacggtcattgccaccaacaacgaaggctaccagaatctaacgttgctg
atttcgcgcgcctatcagcgcgggtacggtgcacaagggccgtatatcgacagggactgg
ctggtcgagcagaaagaagggctgatcctgctgtctggcgcaagaatgggcgatgtgggc
cgggcgctgttgcgcggcaacatggcgctggccgaacagtgtgctgcgttctacgaagag
catttcccggatcgctactatctggaactgatccgtaccggtcgccaggatgaagaaaac
tacctgcacgcggcggtaaaactggctgaagagcgtggtttacccgtcgtggcaaccaac
gacgtgcgttttattgatgccagcgacttcgacgcgcatgaaattcgcgtcgccattcac
gatggtttcacgctcgacgatcctaagcgcccgcgtaactattcggcgcagcagtacatg
cgtaacgaagacgagatgtgcgagctgttttccgatattccggaagcgctggccaacacc
gttgaaatcgctaaacgctgtaacgtcaccgtccgtctcggggaatatttcctgccgcag
ttcccgaccggggatatgaccaccgaagatttcctcgtcctaaaatcgaaagaaggtctg
gaagatcgtcttgaattcctgttcccggacccggccgtccgcgcagaaaaacgcccgccg
tacgatgagcgtctggacatcgaactccaggttatcaaccagatggggttcccgggctac
ttccttatcgttatggaatttatccagtggtcgaaggataacggcgtgccggtaggccca
ggacgtggttccggtgccggctcgctggtggcgtacgcgctgagcattaccgacctcgat
ccgctggaattcgacctgctgttcgaacgtttccttaacccggaacgtgtatcgatgcct
gacttcgacgttgacttctgtatggagaaacgcgaccaggtcatcgaacacgtggcggaa
atgtacggtcgtgacgcggtctcgcagattattaccttcggtacgatggcggcgaaagcg
gttatccgcgacgtgggccgcgtgctcggtcacccgtacggtttcgtcgatagaatctcc
aaactggtaccgcctgacccgggcatgacgcttgccaaagcctttgaagctgaaccacag
ctgccggaaatctacgaggcagatgaagaggttcgcgggctgatcgacatggcccgtcag
ctcgaaggggtcacccgtaacgccggtaagcacgccgggggcgtggttatcgcgccgacc
aaaattaccgactttgccccgctgtactgcgatgaatccgggcttcatccggtaactcag
ttcgataaaaacgacgtggaatacgccggtctggtgaagtttgacttcctggggctgcga
acgctgacgatcatcgactgggcgttgaagatgatcaacccgcgtcgggcgaagcagggc
ttagagccgattgatatcgccgctatcccgctggaagataagaaaagcttcgacatgctg
caacgctcggaaaccaccgctgtgttccagctcgaatcccgcggcatgaaagacctgatt
aagcgtctgcagcccgactgtttcgaagatatgattgccctggtggccctgttccgtccg
gggccgctgcagtccggcatggtagataactttatcgaccgtaagcacgggcgcgaagag
atttcatatcctgacgtacaatggcagcatgaaagcctgaaacccgtactggagccgact
tacggcattatcctgtatcaggaacaggttatgcagattgcccaggtactgtcgggttat
accctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagcccgaagagatg
gccaagcagcgtggcactttcgaagaaggcgccataaacaacggcgtcgacggcgaactg
tcgatgaaaatcttcgacctggtggaaaagttcgccgggtacggctttaacaaatcgcac
tccgcggcctacgcgctggtctcttaccagacgctgtggctgaaggcgcactatccggct
gagtttatggcggcggtcatgacggccgatatggataacaccgagaaagtcgtcgggctg
gtggatgaatgctggcgcatggggctgaaaattctgccgccggatatcaactccgggctg
tatcatttccacgtcaatgacgaaggggaaatcgtatacgggatcggcgcgattaaaggc
gtcggcgaaggcccgattgaagcgattcttgaagcacgtaatgaaggcggttatttccgc
gagctgtttgacctctgcgcccgcgtagacaccaaaaagctcaacaaacgcgtgctggaa
aaactgattatgtctggggcgtttgatcgcctcgggccgcaccgcgcggcgctggcaaac
tcgcttcctgacgcattaaaagcggcagatcagcatgccaaagccgaagcgattggccag
gcggatatgtttggcgttctggccgatgagccggagcaggtggaacaatcctacgccagc
tgccagccgtggccggaacaaattgtactggatggcgaacgggaaacgttgggcttatac
ctgaccggccacccgatcacccagtctctcagagaaattgagcgctatgtcggcggcctg
aggcttaaagacatgcatccgaccgatcgtggtaaagtgactacggcggcggggctcgtg
attgcttcgcgggtaatggtcaccaagcgaggcaatcgtatcggcatctgtacgctggat
gaccgttccgggcggctggaggtgatgttgttcaccgacgcgctggataaataccagcat
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgtgaagttatggacattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccgt
ctccgtcagtctctggaaccccatcgttcggggacaattccagtacatctctactatcag
agggcggatgcacgcgcacggctgcgttttggcgcgacctggcgtgtttctccgagcgac
cgtttactgaacgagttgcgtggcctcattgggtcggagcaggtggaactggagtttgac
taa
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