Scandinavium goeteborgense: A8O29_021820
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Entry
A8O29_021820 CDS
T06630
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8O29_021820 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgoe03019
]
A8O29_021820 (rhlB)
Enzymes [BR:
sgoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A8O29_021820 (rhlB)
Messenger RNA biogenesis [BR:
sgoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8O29_021820 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKN83791
LinkDB
All DBs
Position
4406346..4407617
Genome browser
AA seq
423 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALEKKGFHHCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAAENRQVNQPRALIMAPTRELAVQIHADAEPLAAATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLAAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPQANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
DEKMRLLQTLLEEEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGHSISLA
CEEYALNLPAIETYIGHSIPQSKYNPDALMSDLPKALRLTRTRPGNGPRRSGGGAPRNRR
RSG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcaccctcaggtg
attgaagcccttgaaaagaaagggtttcatcattgcactcctattcaggcactcgcactc
ccgctgacgctggctggacgtgatgttgcaggacaggcgcaaaccggaaccggcaaaacg
atggcgtttctgacgtcaacgttccattatcttctctctcaccctgctgctgagaaccgc
caggttaaccaaccgcgtgcgctgattatggctccaacgcgtgaactggctgttcaaatc
catgctgatgcagaaccgttggcagcggccaccggcctgaagctgggtctcgcttacggc
ggcgacggttacgacaaacagctgaaagtgctggaaagcggcgtcgacattctgatcggc
accaccggtcgtctcattgattacgcgaagcagaactacatcaacctggcggcaattcag
gttgtcgtgctggatgaagccgatcgcatgtacgatctgggctttattaaagatatccgc
tggctgttccgccgcatgccgcaggctaaccagcgcctgaacatgctgttctccgcaacc
ctttcttaccgtgtccgtgaactggcgttcgagcaaatgaataacgccgagtatgtggaa
gtggaacctgagcagaaaaccgggcaccgcattaaagaagaactcttctatccgtctaat
gacgagaaaatgcgcctgctgcaaacgctgctggaagaagagtggccagatcgcgccatt
atttttgctaacaccaagcaccgctgcgaagacgtctggggccatctggctgccgatggt
caccgcgtaggcctgctgaccggcgacgtagcgcagaaaaaacgcctgcgtattctggaa
gaatttacccgtggtgacctcgatattctggtcgcgactgacgttgctgcccgcggcctg
cacattcctgccgtgacacacgtctttaactacgatctgccggatgattgcgaagattac
gttcaccgtatcggtcgtaccggtcgtgctggcctcagcggccactccatcagcctcgct
tgtgaagagtacgcgctgaacctgccggctatcgaaacctatatcggtcactcgattccg
cagagcaagtacaacccagatgcactgatgagcgatttgccgaaggcattgcgcctgacg
cgcacgcgtccaggtaacggcccacgccgttctggtggcggcgcaccgcgcaaccgtcgt
cgttcaggttaa
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