Sphaerochaeta pleomorpha: SpiGrapes_0414
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Entry
SpiGrapes_0414 CDS
T01673
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiGrapes_0414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgp03019
]
SpiGrapes_0414
03016 Transfer RNA biogenesis [BR:
sgp03016
]
SpiGrapes_0414
Enzymes [BR:
sgp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SpiGrapes_0414
Messenger RNA biogenesis [BR:
sgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SpiGrapes_0414
Transfer RNA biogenesis [BR:
sgp03016
]
Prokaryotic type
tRNA degradation factors
SpiGrapes_0414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
S1_RRP5
DUF4969
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AEV28272
UniProt:
G8QW29
LinkDB
All DBs
Position
453151..455256
Genome browser
AA seq
701 aa
AA seq
DB search
MSEVKKVSVKIGNGELVFETGKIAKQASGAVYAHYEGSAVIATVCCGNAPTEALDYVPLS
VEYNEKYYAAGKIPGGFLKRESRPKDKEILVSRIIDRPMRPLFDKAFGREIQIVPTVVSS
DMINTPDIIAVNAASAAVTISDIPFDGPIAAVRIAMLDNEYIVNPTFAQIEQSQLDIVVA
GTRNGITMVEGGAKEVSEETMLGAIATAQPVITAICDAQLELKKIAGKAKLPVFVETVDL
SWLDSVRKAAYPLIKEASFVKGKMERYAALEVAQNKIKEQFAAEIAAEPKHSSQLSTMFD
DLEYEILRSSILNDGLRTDGRNVEQIRPITCEVGVLARAHGSALFTRGETQALAVTTLGT
ASDEQMFDTIDGEKTFSNFMLHYNFPPYSVGECGRLSTGRREIGHGHLAQRALSAIVPSK
DKFPYTVRIVSEIMESNGSSSMASVCGGCLSLMDAGVPISKPVAGIAMGLITEGADYSKY
VVLSDILGEEDHLGDMDFKVTGTEDGITAFQMDIKIAGVTPEIMSKALQQAKRGRLHILH
IMNETLKAPRKEISEYAPKILTMKVDEEKIGAVIGTGGKTIKAIAAQSGSEVNIADDGTV
TIYGKNNASAQMAKDLVKSIIEEPEIGRIYQGTVKRIMDFGAFIEILPGKEGLCHISKLA
KTRVQKVEEVLTVGQVIPVKLIEIDRQNRLNLSYIDAIETK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagtaaaaaaagtttccgtaaaaattggcaatggcgaactggtttttgaaacc
ggtaagattgcaaaacaggcaagtggcgccgtatatgcccattatgaaggaagcgcagta
atcgcaacagtctgttgtggcaatgcccctaccgaagccctcgactatgtaccactcagt
gtcgaatataatgaaaaatactatgcagcaggcaaaatccccggtggattccttaaaagg
gaatcacgcccgaaggacaaagaaattctggtaagcagaatcatcgaccgtccgatgcgc
cctctgtttgacaaggcttttggtcgcgaaatccagattgtcccaaccgttgtctcctct
gacatgatcaataccccagatatcatcgcagttaacgcagcctctgctgccgtaacaatc
agcgatatccctttcgatggccccattgctgctgtacgtattgccatgctcgataatgaa
tatatcgtaaaccctacctttgcacagatagaacagtcccagcttgatattgttgtcgca
ggaacccgtaatggtattacgatggttgaaggcggagcaaaagaagtcagcgaagagacc
atgcttggtgcaatcgccacagcacagccagtgatcactgcaatatgcgatgcacagctt
gaactaaagaaaattgcaggaaaggcgaaactcccggtcttcgtagagactgtcgatctt
tcttggcttgatagcgtccgcaaggctgcctatcccttgatcaaggaagcttcgtttgtc
aaaggaaagatggaacggtatgctgccctggaagttgcccagaataaaatcaaagagcag
tttgccgcagagattgcagcagaacctaaacactccagccagctttccactatgtttgat
gaccttgaatatgaaatccttcggtcctctatcctcaatgacggacttcgcaccgatgga
cgtaatgttgaacagatcaggcctattacctgtgaagtcggcgtattggctagagcacat
ggatcagcactcttcacccgtggagagactcaggcccttgctgtaaccacgctcggtacc
gcttctgatgaacagatgtttgataccatcgacggcgaaaaaactttcagcaatttcatg
ctccactacaactttcctccgtacagcgttggtgagtgtggcagactttccaccggaaga
cgagagattggacatgggcaccttgcccagcgcgcactctctgcaatcgtaccctccaag
gataagttcccgtataccgttcgtatcgtaagcgaaatcatggaatccaatggatcttcc
tcgatggcttcggtttgcggtggttgtctttccctgatggatgccggagtacccatctcc
aagcctgtagctggtattgcaatgggcctgatcaccgaaggtgctgattacagcaagtat
gttgttctttccgatatcctcggcgaagaagatcaccttggtgatatggacttcaaggta
accggaacagaagatggtatcactgctttccagatggatatcaagattgcaggtgtcact
cctgaaatcatgagcaaggccttgcagcaagcaaaacgtggcagactgcatatcctccac
atcatgaacgaaacactgaaggctcctcgtaaggaaatcagtgaatatgcaccaaagatt
ctgaccatgaaagttgatgaggaaaaaatcggtgccgttatcggaaccggtggaaagacc
atcaaggcaattgcagcccagagtggttctgaggtaaatattgctgacgacgggactgta
accatctatggcaagaacaatgcttcggcacagatggcgaaagacttggtcaagtccatc
atagaggaaccggaaatcggtcgtatctatcagggaactgtcaagcggattatggacttc
ggtgcctttattgaaattcttcctggaaaggaaggactctgccacatttcgaaacttgcc
aagacaagggttcagaaagtggaagaagttcttactgtcggccaggtaattcctgtaaaa
cttatcgaaatcgaccgccagaacagactgaatctcagctatatcgacgccatcgagacc
aaataa
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